DNATCO v4.1: results

RNA duplex with a cytosine bulge in complex with berberine

Results of the assignment of 230 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7a3y-m10_A_G1_C2	AAA	AA00	80	0.22	AA00
002	7a3y-m1_A_G1_C2	AAA	AA00	79	0.23	AA00
003	7a3y-m2_A_G1_C2	AAA	AA00	78	0.23	AA00
004	7a3y-m3_A_G1_C2	AAA	AA00	80	0.22	AA00
005	7a3y-m4_A_G1_C2	AAA	AA00	80	0.23	AA00
006	7a3y-m5_A_G1_C2	AAA	AA00	79	0.23	AA00
007	7a3y-m6_A_G1_C2	AAA	AA00	80	0.22	AA00
008	7a3y-m7_A_G1_C2	AAA	AA00	80	0.23	AA00
009	7a3y-m8_A_G1_C2	AAA	AA00	80	0.23	AA00
010	7a3y-m9_A_G1_C2	AAA	AA00	80	0.22	AA00
011	7a3y-m10_A_C2_A3	AAA	AA00	82	0.14	AA00
012	7a3y-m1_A_C2_A3	AAA	AA00	81	0.14	AA00
013	7a3y-m2_A_C2_A3	AAA	AA00	82	0.14	AA00
014	7a3y-m3_A_C2_A3	AAA	AA00	81	0.14	AA00
015	7a3y-m4_A_C2_A3	AAA	AA00	81	0.14	AA00
016	7a3y-m5_A_C2_A3	AAA	AA00	81	0.14	AA00
017	7a3y-m6_A_C2_A3	AAA	AA00	81	0.14	AA00
018	7a3y-m7_A_C2_A3	AAA	AA00	82	0.14	AA00
019	7a3y-m8_A_C2_A3	AAA	AA00	82	0.14	AA00
020	7a3y-m9_A_C2_A3	AAA	AA00	81	0.14	AA00
021	7a3y-m10_A_A3_G4	AAA	AA00	82	0.16	AA00
022	7a3y-m1_A_A3_G4	AAA	AA00	80	0.17	AA00
023	7a3y-m2_A_A3_G4	AAA	AA00	80	0.17	AA00
024	7a3y-m3_A_A3_G4	AAA	AA00	81	0.16	AA00
025	7a3y-m4_A_A3_G4	AAA	AA00	80	0.17	AA00
026	7a3y-m5_A_A3_G4	AAA	AA00	80	0.17	AA00
027	7a3y-m6_A_A3_G4	AAA	AA00	81	0.17	AA00
028	7a3y-m7_A_A3_G4	AAA	AA00	79	0.17	AA00
029	7a3y-m8_A_A3_G4	AAA	AA00	82	0.17	AA00
030	7a3y-m9_A_A3_G4	AAA	AA00	80	0.17	AA00
031	7a3y-m10_A_G4_C5	AAA	AA00	83	0.23	AA00
032	7a3y-m1_A_G4_C5	AAA	AA00	82	0.24	AA00
033	7a3y-m2_A_G4_C5	AAA	AA00	82	0.24	AA00
034	7a3y-m3_A_G4_C5	AAA	AA00	83	0.23	AA00
035	7a3y-m4_A_G4_C5	AAA	AA00	83	0.23	AA00
036	7a3y-m5_A_G4_C5	AAA	AA00	81	0.24	AA00
037	7a3y-m6_A_G4_C5	AAA	AA00	81	0.25	AA00
038	7a3y-m7_A_G4_C5	AAA	AA00	81	0.25	AA00
039	7a3y-m8_A_G4_C5	AAA	AA00	82	0.25	AA00
040	7a3y-m9_A_G4_C5	AAA	AA00	82	0.24	AA00
041	7a3y-m10_A_C5_U6	AAA	AA00	71	0.26	AA00
042	7a3y-m1_A_C5_U6	AAA	AA00	72	0.25	AA00
043	7a3y-m2_A_C5_U6	AAA	AA00	73	0.25	AA00
044	7a3y-m3_A_C5_U6	AAA	AA00	72	0.27	AA00
045	7a3y-m4_A_C5_U6	AAA	AA00	72	0.26	AA00
046	7a3y-m5_A_C5_U6	AAA	AA00	72	0.26	AA00
047	7a3y-m6_A_C5_U6	AAA	AA00	72	0.26	AA00
048	7a3y-m7_A_C5_U6	AAA	AA00	72	0.25	AA00
049	7a3y-m8_A_C5_U6	AAA	AA00	71	0.26	AA00
050	7a3y-m9_A_C5_U6	AAA	AA00	74	0.26	AA00
051	7a3y-m10_A_U6_C7	A-B	AB05	13	0.77	AB05
052	7a3y-m1_A_U6_C7	A-B	AB05	16	0.76	AB05
053	7a3y-m2_A_U6_C7	A-B	AB05	15	0.76	AB05
054	7a3y-m3_A_U6_C7	A-B	AB05	13	0.77	AB05
055	7a3y-m4_A_U6_C7	A-B	AB05	14	0.77	AB05
056	7a3y-m5_A_U6_C7	A-B	AB05	14	0.77	AB05
057	7a3y-m6_A_U6_C7	A-B	AB05	15	0.76	AB05
058	7a3y-m7_A_U6_C7	A-B	AB05	16	0.76	AB05
059	7a3y-m8_A_U6_C7	A-B	AB05	14	0.77	AB05
060	7a3y-m9_A_U6_C7	A-B	AB05	15	0.76	AB05
061	7a3y-m10_A_C7_G8	NAN	NANT	0	1.36	OP16
062	7a3y-m1_A_C7_G8	NAN	NANT	0	1.37	OP16
063	7a3y-m2_A_C7_G8	NAN	NANT	0	1.36	OP16
064	7a3y-m3_A_C7_G8	NAN	NANT	0	1.36	OP16
065	7a3y-m4_A_C7_G8	NAN	NANT	0	1.36	OP16
066	7a3y-m5_A_C7_G8	NAN	NANT	0	1.37	OP16
067	7a3y-m6_A_C7_G8	NAN	NANT	0	1.36	OP16
068	7a3y-m7_A_C7_G8	NAN	NANT	0	1.36	OP16
069	7a3y-m8_A_C7_G8	NAN	NANT	0	1.36	OP16
070	7a3y-m9_A_C7_G8	NAN	NANT	0	1.36	OP16
071	7a3y-m10_A_G8_U9	AAA	AA00	73	0.29	AA00
072	7a3y-m1_A_G8_U9	AAA	AA00	75	0.28	AA00
073	7a3y-m2_A_G8_U9	AAA	AA00	72	0.29	AA00
074	7a3y-m3_A_G8_U9	AAA	AA00	72	0.29	AA00
075	7a3y-m4_A_G8_U9	AAA	AA00	73	0.29	AA00
076	7a3y-m5_A_G8_U9	AAA	AA00	72	0.29	AA00
077	7a3y-m6_A_G8_U9	AAA	AA00	72	0.29	AA00
078	7a3y-m7_A_G8_U9	AAA	AA00	72	0.29	AA00
079	7a3y-m8_A_G8_U9	AAA	AA00	72	0.29	AA00
080	7a3y-m9_A_G8_U9	AAA	AA00	72	0.29	AA00
081	7a3y-m10_A_U9_C10	AAA	AA00	78	0.26	AA00
082	7a3y-m1_A_U9_C10	AAA	AA00	79	0.25	AA00
083	7a3y-m2_A_U9_C10	AAA	AA00	79	0.25	AA00
084	7a3y-m3_A_U9_C10	AAA	AA00	79	0.25	AA00
085	7a3y-m4_A_U9_C10	AAA	AA00	78	0.25	AA00
086	7a3y-m5_A_U9_C10	AAA	AA00	79	0.25	AA00
087	7a3y-m6_A_U9_C10	AAA	AA00	79	0.24	AA00
088	7a3y-m7_A_U9_C10	AAA	AA00	78	0.25	AA00
089	7a3y-m8_A_U9_C10	AAA	AA00	77	0.26	AA00
090	7a3y-m9_A_U9_C10	AAA	AA00	78	0.25	AA00
091	7a3y-m10_A_C10_C11	AAA	AA00	81	0.21	AA00
092	7a3y-m1_A_C10_C11	AAA	AA00	81	0.21	AA00
093	7a3y-m2_A_C10_C11	AAA	AA00	81	0.21	AA00
094	7a3y-m3_A_C10_C11	AAA	AA00	81	0.21	AA00
095	7a3y-m4_A_C10_C11	AAA	AA00	81	0.21	AA00
096	7a3y-m5_A_C10_C11	AAA	AA00	80	0.21	AA00
097	7a3y-m6_A_C10_C11	AAA	AA00	81	0.21	AA00
098	7a3y-m7_A_C10_C11	AAA	AA00	81	0.21	AA00
099	7a3y-m8_A_C10_C11	AAA	AA00	80	0.21	AA00
100	7a3y-m9_A_C10_C11	AAA	AA00	81	0.21	AA00
101	7a3y-m10_A_C11_U12	AAA	AA00	82	0.18	AA00
102	7a3y-m1_A_C11_U12	AAA	AA00	81	0.18	AA00
103	7a3y-m2_A_C11_U12	AAA	AA00	82	0.19	AA00
104	7a3y-m3_A_C11_U12	AAA	AA00	82	0.18	AA00
105	7a3y-m4_A_C11_U12	AAA	AA00	82	0.18	AA00
106	7a3y-m5_A_C11_U12	AAA	AA00	81	0.19	AA00
107	7a3y-m6_A_C11_U12	AAA	AA00	82	0.19	AA00
108	7a3y-m7_A_C11_U12	AAA	AA00	81	0.19	AA00
109	7a3y-m8_A_C11_U12	AAA	AA00	81	0.19	AA00
110	7a3y-m9_A_C11_U12	AAA	AA00	81	0.19	AA00
111	7a3y-m10_A_U12_G13	AAA	AA00	80	0.17	AA00
112	7a3y-m1_A_U12_G13	AAA	AA00	81	0.17	AA00
113	7a3y-m2_A_U12_G13	AAA	AA00	81	0.17	AA00
114	7a3y-m3_A_U12_G13	AAA	AA00	82	0.16	AA00
115	7a3y-m4_A_U12_G13	AAA	AA00	81	0.16	AA00
116	7a3y-m5_A_U12_G13	AAA	AA00	80	0.17	AA00
117	7a3y-m6_A_U12_G13	AAA	AA00	81	0.16	AA00
118	7a3y-m7_A_U12_G13	AAA	AA00	81	0.16	AA00
119	7a3y-m8_A_U12_G13	AAA	AA00	81	0.16	AA00
120	7a3y-m9_A_U12_G13	AAA	AA00	80	0.17	AA00
121	7a3y-m10_B_C14_A15	AAA	AA00	78	0.17	AA00
122	7a3y-m1_B_C14_A15	AAA	AA00	78	0.17	AA00
123	7a3y-m2_B_C14_A15	AAA	AA00	78	0.16	AA00
124	7a3y-m3_B_C14_A15	AAA	AA00	79	0.16	AA00
125	7a3y-m4_B_C14_A15	AAA	AA00	78	0.17	AA00
126	7a3y-m5_B_C14_A15	AAA	AA00	80	0.16	AA00
127	7a3y-m6_B_C14_A15	AAA	AA00	78	0.16	AA00
128	7a3y-m7_B_C14_A15	AAA	AA00	78	0.16	AA00
129	7a3y-m8_B_C14_A15	AAA	AA00	77	0.17	AA00
130	7a3y-m9_B_C14_A15	AAA	AA00	78	0.16	AA00
131	7a3y-m10_B_A15_G16	AAA	AA00	78	0.15	AA00
132	7a3y-m1_B_A15_G16	AAA	AA00	78	0.15	AA00
133	7a3y-m2_B_A15_G16	AAA	AA00	78	0.15	AA00
134	7a3y-m3_B_A15_G16	AAA	AA00	79	0.16	AA00
135	7a3y-m4_B_A15_G16	AAA	AA00	78	0.15	AA00
136	7a3y-m5_B_A15_G16	AAA	AA00	78	0.16	AA00
137	7a3y-m6_B_A15_G16	AAA	AA00	79	0.16	AA00
138	7a3y-m7_B_A15_G16	AAA	AA00	79	0.15	AA00
139	7a3y-m8_B_A15_G16	AAA	AA00	78	0.16	AA00
140	7a3y-m9_B_A15_G16	AAA	AA00	78	0.16	AA00
141	7a3y-m10_B_G16_G17	AAA	AA00	80	0.17	AA00
142	7a3y-m1_B_G16_G17	AAA	AA00	80	0.17	AA00
143	7a3y-m2_B_G16_G17	AAA	AA00	80	0.16	AA00
144	7a3y-m3_B_G16_G17	AAA	AA00	79	0.17	AA00
145	7a3y-m4_B_G16_G17	AAA	AA00	80	0.17	AA00
146	7a3y-m5_B_G16_G17	AAA	AA00	79	0.17	AA00
147	7a3y-m6_B_G16_G17	AAA	AA00	79	0.17	AA00
148	7a3y-m7_B_G16_G17	AAA	AA00	79	0.17	AA00
149	7a3y-m8_B_G16_G17	AAA	AA00	79	0.17	AA00
150	7a3y-m9_B_G16_G17	AAA	AA00	80	0.17	AA00
151	7a3y-m10_B_G17_A18	AAA	AA00	78	0.18	AA00
152	7a3y-m1_B_G17_A18	AAA	AA00	79	0.18	AA00
153	7a3y-m2_B_G17_A18	AAA	AA00	80	0.17	AA00
154	7a3y-m3_B_G17_A18	AAA	AA00	80	0.17	AA00
155	7a3y-m4_B_G17_A18	AAA	AA00	79	0.18	AA00
156	7a3y-m5_B_G17_A18	AAA	AA00	80	0.17	AA00
157	7a3y-m6_B_G17_A18	AAA	AA00	80	0.17	AA00
158	7a3y-m7_B_G17_A18	AAA	AA00	78	0.17	AA00
159	7a3y-m8_B_G17_A18	AAA	AA00	79	0.18	AA00
160	7a3y-m9_B_G17_A18	AAA	AA00	81	0.17	AA00
161	7a3y-m10_B_A18_U19	AAA	AA00	78	0.29	AA00
162	7a3y-m1_B_A18_U19	AAA	AA00	79	0.28	AA00
163	7a3y-m2_B_A18_U19	AAA	AA00	78	0.29	AA00
164	7a3y-m3_B_A18_U19	AAA	AA00	78	0.29	AA00
165	7a3y-m4_B_A18_U19	AAA	AA00	79	0.29	AA00
166	7a3y-m5_B_A18_U19	AAA	AA00	79	0.29	AA00
167	7a3y-m6_B_A18_U19	AAA	AA00	78	0.29	AA00
168	7a3y-m7_B_A18_U19	AAA	AA00	78	0.29	AA00
169	7a3y-m8_B_A18_U19	AAA	AA00	78	0.29	AA00
170	7a3y-m9_B_A18_U19	AAA	AA00	78	0.29	AA00
171	7a3y-m10_B_U19_A20	ICL	IC01	60	0.19	IC01
172	7a3y-m1_B_U19_A20	ICL	IC01	63	0.18	IC01
173	7a3y-m2_B_U19_A20	ICL	IC01	61	0.19	IC01
174	7a3y-m3_B_U19_A20	ICL	IC01	62	0.19	IC01
175	7a3y-m4_B_U19_A20	ICL	IC01	63	0.18	IC01
176	7a3y-m5_B_U19_A20	ICL	IC01	64	0.18	IC01
177	7a3y-m6_B_U19_A20	ICL	IC01	61	0.20	IC01
178	7a3y-m7_B_U19_A20	ICL	IC01	61	0.19	IC01
179	7a3y-m8_B_U19_A20	ICL	IC01	61	0.19	IC01
180	7a3y-m9_B_U19_A20	ICL	IC01	62	0.19	IC01
181	7a3y-m10_B_A20_G21	B-A	BA08	56	0.36	BA08
182	7a3y-m1_B_A20_G21	B-A	BA08	56	0.35	BA08
183	7a3y-m2_B_A20_G21	B-A	BA08	56	0.36	BA08
184	7a3y-m3_B_A20_G21	B-A	BA08	56	0.36	BA08
185	7a3y-m4_B_A20_G21	B-A	BA08	57	0.35	BA08
186	7a3y-m5_B_A20_G21	B-A	BA08	56	0.36	BA08
187	7a3y-m6_B_A20_G21	B-A	BA08	56	0.37	BA08
188	7a3y-m7_B_A20_G21	B-A	BA08	56	0.36	BA08
189	7a3y-m8_B_A20_G21	B-A	BA08	56	0.37	BA08
190	7a3y-m9_B_A20_G21	B-A	BA08	56	0.36	BA08
191	7a3y-m10_B_G21_C22	AAA	AA00	75	0.21	AA00
192	7a3y-m1_B_G21_C22	AAA	AA00	77	0.20	AA00
193	7a3y-m2_B_G21_C22	AAA	AA00	74	0.22	AA00
194	7a3y-m3_B_G21_C22	AAA	AA00	74	0.21	AA00
195	7a3y-m4_B_G21_C22	AAA	AA00	76	0.20	AA00
196	7a3y-m5_B_G21_C22	AAA	AA00	74	0.22	AA00
197	7a3y-m6_B_G21_C22	AAA	AA00	74	0.20	AA00
198	7a3y-m7_B_G21_C22	AAA	AA00	73	0.22	AA00
199	7a3y-m8_B_G21_C22	AAA	AA00	73	0.22	AA00
200	7a3y-m9_B_G21_C22	AAA	AA00	76	0.20	AA00
201	7a3y-m10_B_C22_U23	AAA	AA00	80	0.18	AA00
202	7a3y-m1_B_C22_U23	AAA	AA00	81	0.19	AA00
203	7a3y-m2_B_C22_U23	AAA	AA00	80	0.19	AA00
204	7a3y-m3_B_C22_U23	AAA	AA00	80	0.19	AA00
205	7a3y-m4_B_C22_U23	AAA	AA00	81	0.19	AA00
206	7a3y-m5_B_C22_U23	AAA	AA00	79	0.19	AA00
207	7a3y-m6_B_C22_U23	AAA	AA00	81	0.19	AA00
208	7a3y-m7_B_C22_U23	AAA	AA00	81	0.19	AA00
209	7a3y-m8_B_C22_U23	AAA	AA00	80	0.19	AA00
210	7a3y-m9_B_C22_U23	AAA	AA00	82	0.19	AA00
211	7a3y-m10_B_U23_G24	AAA	AA00	80	0.15	AA00
212	7a3y-m1_B_U23_G24	AAA	AA00	81	0.15	AA00
213	7a3y-m2_B_U23_G24	AAA	AA00	80	0.15	AA00
214	7a3y-m3_B_U23_G24	AAA	AA00	81	0.15	AA00
215	7a3y-m4_B_U23_G24	AAA	AA00	81	0.15	AA00
216	7a3y-m5_B_U23_G24	AAA	AA00	82	0.15	AA00
217	7a3y-m6_B_U23_G24	AAA	AA00	81	0.15	AA00
218	7a3y-m7_B_U23_G24	AAA	AA00	82	0.15	AA00
219	7a3y-m8_B_U23_G24	AAA	AA00	82	0.15	AA00
220	7a3y-m9_B_U23_G24	AAA	AA00	82	0.15	AA00
221	7a3y-m10_B_G24_C25	AAA	AA00	82	0.22	AA00
222	7a3y-m1_B_G24_C25	AAA	AA00	82	0.22	AA00
223	7a3y-m2_B_G24_C25	AAA	AA00	82	0.22	AA00
224	7a3y-m3_B_G24_C25	AAA	AA00	83	0.21	AA00
225	7a3y-m4_B_G24_C25	AAA	AA00	81	0.22	AA00
226	7a3y-m5_B_G24_C25	AAA	AA00	82	0.21	AA00
227	7a3y-m6_B_G24_C25	AAA	AA00	82	0.21	AA00
228	7a3y-m7_B_G24_C25	AAA	AA00	82	0.22	AA00
229	7a3y-m8_B_G24_C25	AAA	AA00	82	0.21	AA00
230	7a3y-m9_B_G24_C25	AAA	AA00	83	0.21	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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N

Results of the assignment of 230 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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