DNATCO v4.1: results

Sarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modification

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6zxz_A_G2648_C2649	AAA	AA08	68	0.23	AA08
02	6zxz_A_C2649_U2650	AAA	AA00	91	0.17	AA00
03	6zxz_A_U2650_C2651	AAA	AA00	77	0.16	AA00
04	6zxz_A_C2651_C2652	AAA	AA00	95	0.15	AA00
05	6zxz_A_C2652_U2653	AAA	AA08	77	0.24	AA08
06	6zxz_A_U2653_A2654	ZZZ	ZZ01	98	0.11	ZZ01
07	6zxz_A_A2654_G2655	OPN	OP23	87	0.19	OP23
08	6zxz_A_G2655_U2656	OPN	OP15	93	0.10	OP15
09	6zxz_A_U2656_A2657	AAA	AA00	70	0.27	AA00
10	6zxz_A_A2657_C2658	AAA	AA08	36	0.44	AA08
11	6zxz_A_C2658_G2659	AAA	AA00	78	0.24	AA00
12	6zxz_A_G2659_A2660	OPN	OP03	90	0.18	OP03
13	6zxz_A_A2660_G2661	AAA	AA08	75	0.25	AA08
14	6zxz_A_G2661_A2662	AAA	AA02	46	0.20	AA02
15	6zxz_A_A2662_G2663	AAw	AA05	47	0.42	AA05
16	6zxz_A_G2663_G2664	AAA	AA08	62	0.43	AA08
17	6zxz_A_G2664_A2665	OPN	OP08	79	0.14	OP08
18	6zxz_A_A2665_C2666	AAA	AA08	32	0.37	AA08
19	6zxz_A_C2666_C2667	AAA	AA00	36	0.43	AA00
20	6zxz_A_C2667_G2668	AAA	AA00	21	0.52	AA00
21	6zxz_A_G2668_G2669	AAA	AA00	83	0.09	AA00
22	6zxz_A_G2671_U2672	AAA	AA08	82	0.16	AA08
23	6zxz_A_U2672_G2673	AAA	AA08	78	0.33	AA08
24	6zxz_B_G2648_C2649	AAA	AA08	89	0.19	AA08
25	6zxz_B_C2649_U2650	AAA	AA00	80	0.21	AA00
26	6zxz_B_U2650_C2651	AAA	AA00	92	0.14	AA00
27	6zxz_B_C2651_C2652	AAA	AA00	97	0.13	AA00
28	6zxz_B_C2652_U2653	AAA	AA00	60	0.36	AA00
29	6zxz_B_U2653_A2654	ZZZ	ZZ01	95	0.15	ZZ01
30	6zxz_B_A2654_G2655	OPN	OP23	90	0.26	OP23
31	6zxz_B_G2655_U2656	OPN	OP15	96	0.13	OP15
32	6zxz_B_U2656_A2657	AAA	AA00	53	0.32	AA00
33	6zxz_B_A2657_C2658	AAA	AA08	27	0.47	AA08
34	6zxz_B_C2658_G2659	AAA	AA00	71	0.21	AA00
35	6zxz_B_G2659_A2660	OPN	OP03	93	0.12	OP03
36	6zxz_B_A2660_G2661	AAA	AA08	66	0.28	AA08
37	6zxz_B_G2661_A2662	AAA	AA02	54	0.21	AA02
38	6zxz_B_A2662_G2663	AAw	AA05	38	0.48	AA05
39	6zxz_B_G2663_G2664	AAA	AA08	52	0.42	AA08
40	6zxz_B_G2664_A2665	OPN	OP08	90	0.17	OP08
41	6zxz_B_A2665_C2666	AAA	AA00	26	0.35	AA00
42	6zxz_B_C2666_C2667	AAA	AA08	68	0.34	AA08
43	6zxz_B_C2667_G2668	AAA	AA00	14	0.51	AA00
44	6zxz_B_G2668_G2669	AAA	AA00	81	0.09	AA00
45	6zxz_B_G2671_U2672	AAA	AA00	79	0.20	AA00
46	6zxz_B_U2672_G2673	NAN	NANT	0	0.51	AB2S
47	6zxz_C_G2648_C2649	AAA	AA08	81	0.19	AA08
48	6zxz_C_C2649_U2650	AAA	AA00	83	0.21	AA00
49	6zxz_C_U2650_C2651	AAA	AA00	90	0.13	AA00
50	6zxz_C_C2651_C2652	AAA	AA00	97	0.13	AA00
51	6zxz_C_C2652_U2653	AAA	AA00	72	0.31	AA00
52	6zxz_C_U2653_A2654	ZZZ	ZZ01	92	0.12	ZZ01
53	6zxz_C_A2654_G2655	OPN	OP23	87	0.18	OP23
54	6zxz_C_G2655_U2656	OPN	OP15	91	0.11	OP15
55	6zxz_C_U2656_A2657	AAA	AA00	68	0.29	AA00
56	6zxz_C_A2657_C2658	AAA	AA08	33	0.42	AA08
57	6zxz_C_C2658_G2659	AAA	AA00	84	0.23	AA00
58	6zxz_C_G2659_A2660	OPN	OP03	90	0.15	OP03
59	6zxz_C_A2660_G2661	AAA	AA08	78	0.27	AA08
60	6zxz_C_G2661_A2662	AAA	AA09	80	0.27	AA09
61	6zxz_C_A2662_G2663	NAN	NANT	0	0.41	AA05
62	6zxz_C_G2663_G2664	AAA	AA08	61	0.46	AA08
63	6zxz_C_G2664_A2665	OPN	OP08	75	0.18	OP08
64	6zxz_C_A2665_C2666	AAA	AA00	20	0.37	AA00
65	6zxz_C_C2666_C2667	AAA	AA08	79	0.30	AA08
66	6zxz_C_C2667_G2668	AAA	AA00	12	0.52	AA00
67	6zxz_C_G2668_G2669	AAA	AA00	77	0.15	AA00
68	6zxz_C_G2671_U2672	AAA	AA08	81	0.15	AA08
69	6zxz_C_U2672_G2673	AAA	AA08	68	0.39	AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 69 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible