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Conformers: ABBIImiBZICOPNSYNN
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter

Results of the assignment of 288 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016zx7-m10_A_DC1_DG2SYNBBS1580.31 BBS1
0026zx7-m11_A_DC1_DG2SYNBBS1570.31 BBS1
0036zx7-m12_A_DC1_DG2SYNBBS1600.30 BBS1
0046zx7-m1_A_DC1_DG2SYNBBS1580.31 BBS1
0056zx7-m2_A_DC1_DG2SYNBBS1630.29 BBS1
0066zx7-m3_A_DC1_DG2SYNBBS1570.31 BBS1
0076zx7-m4_A_DC1_DG2SYNBBS1600.30 BBS1
0086zx7-m5_A_DC1_DG2SYNBBS1600.29 BBS1
0096zx7-m6_A_DC1_DG2SYNBBS1610.29 BBS1
0106zx7-m7_A_DC1_DG2SYNBBS1630.28 BBS1
0116zx7-m8_A_DC1_DG2SYNBBS1640.28 BBS1
0126zx7-m9_A_DC1_DG2SYNBBS1570.31 BBS1
0136zx7-m10_A_DG2_DG3NANNANT00.65 AB1S
0146zx7-m11_A_DG2_DG3NANNANT00.65 AB1S
0156zx7-m12_A_DG2_DG3NANNANT00.66 AB1S
0166zx7-m1_A_DG2_DG3NANNANT00.64 AB1S
0176zx7-m2_A_DG2_DG3NANNANT00.67 AB1S
0186zx7-m3_A_DG2_DG3NANNANT00.64 AB1S
0196zx7-m4_A_DG2_DG3NANNANT00.66 AB1S
0206zx7-m5_A_DG2_DG3NANNANT00.66 AB1S
0216zx7-m6_A_DG2_DG3NANNANT00.66 AB1S
0226zx7-m7_A_DG2_DG3NANNANT00.67 AB1S
0236zx7-m8_A_DG2_DG3NANNANT00.68 AB1S
0246zx7-m9_A_DG2_DG3NANNANT00.64 AB1S
0256zx7-m10_A_DG3_DG4NANNANT00.32 BBS1
0266zx7-m11_A_DG3_DG4NANNANT00.30 BBS1
0276zx7-m12_A_DG3_DG4NANNANT00.32 BBS1
0286zx7-m1_A_DG3_DG4NANNANT00.30 BBS1
0296zx7-m2_A_DG3_DG4NANNANT00.32 BBS1
0306zx7-m3_A_DG3_DG4NANNANT00.29 BBS1
0316zx7-m4_A_DG3_DG4NANNANT00.30 BBS1
0326zx7-m5_A_DG3_DG4NANNANT00.31 BBS1
0336zx7-m6_A_DG3_DG4NANNANT00.30 BBS1
0346zx7-m7_A_DG3_DG4NANNANT00.33 BBS1
0356zx7-m8_A_DG3_DG4NANNANT00.32 BBS1
0366zx7-m9_A_DG3_DG4NANNANT00.30 BBS1
0376zx7-m10_A_DG4_DC5NANNANT00.67 OP13
0386zx7-m11_A_DG4_DC5NANNANT00.68 OP13
0396zx7-m12_A_DG4_DC5NANNANT00.67 OP13
0406zx7-m1_A_DG4_DC5NANNANT00.68 OP13
0416zx7-m2_A_DG4_DC5NANNANT00.67 OP13
0426zx7-m3_A_DG4_DC5NANNANT00.68 OP13
0436zx7-m4_A_DG4_DC5NANNANT00.68 OP13
0446zx7-m5_A_DG4_DC5NANNANT00.67 OP13
0456zx7-m6_A_DG4_DC5NANNANT00.67 OP13
0466zx7-m7_A_DG4_DC5NANNANT00.68 OP13
0476zx7-m8_A_DG4_DC5NANNANT00.66 OP13
0486zx7-m9_A_DG4_DC5NANNANT00.66 OP13
0496zx7-m10_A_DC5_DG6NANNANT00.65 OP11
0506zx7-m11_A_DC5_DG6NANNANT00.64 OP11
0516zx7-m12_A_DC5_DG6NANNANT00.66 OP11
0526zx7-m1_A_DC5_DG6NANNANT00.66 OP11
0536zx7-m2_A_DC5_DG6NANNANT00.62 OP11
0546zx7-m3_A_DC5_DG6NANNANT00.66 OP11
0556zx7-m4_A_DC5_DG6NANNANT00.67 OP11
0566zx7-m5_A_DC5_DG6NANNANT00.64 OP11
0576zx7-m6_A_DC5_DG6NANNANT00.66 OP11
0586zx7-m7_A_DC5_DG6NANNANT00.63 OP11
0596zx7-m8_A_DC5_DG6NANNANT00.64 OP11
0606zx7-m9_A_DC5_DG6NANNANT00.86 OP20
0616zx7-m10_A_DG6_DC7NANNANT00.63 AA12
0626zx7-m11_A_DG6_DC7NANNANT00.72 AB04
0636zx7-m12_A_DG6_DC7NANNANT00.61 IC02
0646zx7-m1_A_DG6_DC7NANNANT00.71 AB04
0656zx7-m2_A_DG6_DC7NANNANT00.62 IC02
0666zx7-m3_A_DG6_DC7NANNANT00.70 AB04
0676zx7-m4_A_DG6_DC7NANNANT00.72 AB04
0686zx7-m5_A_DG6_DC7NANNANT00.73 AB04
0696zx7-m6_A_DG6_DC7NANNANT00.72 AB04
0706zx7-m7_A_DG6_DC7NANNANT00.78 AB04
0716zx7-m8_A_DG6_DC7NANNANT00.62 IC02
0726zx7-m9_A_DG6_DC7NANNANT00.61 IC02
0736zx7-m10_A_DC7_DG8NANNANT01.38 OP26
0746zx7-m11_A_DC7_DG8NANNANT01.38 OP26
0756zx7-m12_A_DC7_DG8NANNANT01.38 OP26
0766zx7-m1_A_DC7_DG8NANNANT01.37 OP26
0776zx7-m2_A_DC7_DG8NANNANT01.39 OP26
0786zx7-m3_A_DC7_DG8NANNANT01.38 OP26
0796zx7-m4_A_DC7_DG8NANNANT01.38 OP26
0806zx7-m5_A_DC7_DG8NANNANT01.39 OP26
0816zx7-m6_A_DC7_DG8NANNANT01.38 OP26
0826zx7-m7_A_DC7_DG8NANNANT01.38 OP26
0836zx7-m8_A_DC7_DG8NANNANT01.39 OP26
0846zx7-m9_A_DC7_DG8NANNANT01.38 OP26
0856zx7-m10_A_DG8_DG9SYNBBS1330.53 BBS1
0866zx7-m11_A_DG8_DG9SYNBBS1340.52 BBS1
0876zx7-m12_A_DG8_DG9SYNBBS1310.53 BBS1
0886zx7-m1_A_DG8_DG9SYNBBS1260.51 BBS1
0896zx7-m2_A_DG8_DG9SYNBBS1350.54 BBS1
0906zx7-m3_A_DG8_DG9SYNBBS1270.51 BBS1
0916zx7-m4_A_DG8_DG9SYNBBS1350.52 BBS1
0926zx7-m5_A_DG8_DG9SYNBBS1340.53 BBS1
0936zx7-m6_A_DG8_DG9SYNBBS1290.53 BBS1
0946zx7-m7_A_DG8_DG9SYNBBS1290.54 BBS1
0956zx7-m8_A_DG8_DG9SYNBBS1340.54 BBS1
0966zx7-m9_A_DG8_DG9SYNBBS1290.52 BBS1
0976zx7-m10_A_DG9_DG10NANNANT00.65 AB1S
0986zx7-m11_A_DG9_DG10NANNANT00.66 AB1S
0996zx7-m12_A_DG9_DG10NANNANT00.66 AB1S
1006zx7-m1_A_DG9_DG10NANNANT00.66 AB1S
1016zx7-m2_A_DG9_DG10NANNANT00.67 AB1S
1026zx7-m3_A_DG9_DG10NANNANT00.66 AB1S
1036zx7-m4_A_DG9_DG10NANNANT00.68 AB1S
1046zx7-m5_A_DG9_DG10NANNANT00.67 AB1S
1056zx7-m6_A_DG9_DG10NANNANT00.67 AB1S
1066zx7-m7_A_DG9_DG10NANNANT00.68 AB1S
1076zx7-m8_A_DG9_DG10NANNANT00.68 AB1S
1086zx7-m9_A_DG9_DG10NANNANT00.66 AB1S
1096zx7-m10_A_DG10_DA11NANNANT00.32 BBS1
1106zx7-m11_A_DG10_DA11NANNANT00.33 BBS1
1116zx7-m12_A_DG10_DA11NANNANT00.33 BBS1
1126zx7-m1_A_DG10_DA11NANNANT00.33 BBS1
1136zx7-m2_A_DG10_DA11NANNANT00.33 BBS1
1146zx7-m3_A_DG10_DA11NANNANT00.33 BBS1
1156zx7-m4_A_DG10_DA11NANNANT00.35 BBS1
1166zx7-m5_A_DG10_DA11NANNANT00.34 BBS1
1176zx7-m6_A_DG10_DA11NANNANT00.33 BBS1
1186zx7-m7_A_DG10_DA11NANNANT00.33 BBS1
1196zx7-m8_A_DG10_DA11NANNANT00.33 BBS1
1206zx7-m9_A_DG10_DA11NANNANT00.33 BBS1
1216zx7-m10_A_DA11_DG12NANNANT00.56 BB00
1226zx7-m11_A_DA11_DG12NANNANT00.56 BB00
1236zx7-m12_A_DA11_DG12NANNANT00.56 BB00
1246zx7-m1_A_DA11_DG12NANNANT00.56 BB00
1256zx7-m2_A_DA11_DG12NANNANT00.55 BB00
1266zx7-m3_A_DA11_DG12NANNANT00.56 BB00
1276zx7-m4_A_DA11_DG12NANNANT00.56 BB00
1286zx7-m5_A_DA11_DG12NANNANT00.55 BB00
1296zx7-m6_A_DA11_DG12BBBBB00140.54 BB00
1306zx7-m7_A_DA11_DG12NANNANT00.55 BB00
1316zx7-m8_A_DA11_DG12NANNANT00.55 BB00
1326zx7-m9_A_DA11_DG12NANNANT00.56 BB00
1336zx7-m10_A_DG12_DG13NANNANT00.58 BB00
1346zx7-m11_A_DG12_DG13NANNANT00.58 BB00
1356zx7-m12_A_DG12_DG13NANNANT00.57 BB00
1366zx7-m1_A_DG12_DG13NANNANT00.58 BB00
1376zx7-m2_A_DG12_DG13NANNANT00.58 BB00
1386zx7-m3_A_DG12_DG13NANNANT00.57 BB00
1396zx7-m4_A_DG12_DG13BBBBB00130.56 BB00
1406zx7-m5_A_DG12_DG13NANNANT00.57 BB00
1416zx7-m6_A_DG12_DG13BBBBB00370.51 BB00
1426zx7-m7_A_DG12_DG13BBBBB00170.54 BB00
1436zx7-m8_A_DG12_DG13NANNANT00.57 BB00
1446zx7-m9_A_DG12_DG13NANNANT00.58 BB00
1456zx7-m10_A_DG13_DA14NANNANT00.76 OP18
1466zx7-m11_A_DG13_DA14NANNANT00.74 OP18
1476zx7-m12_A_DG13_DA14NANNANT00.72 OP18
1486zx7-m1_A_DG13_DA14NANNANT00.71 OP18
1496zx7-m2_A_DG13_DA14NANNANT00.73 OP18
1506zx7-m3_A_DG13_DA14NANNANT00.71 OP18
1516zx7-m4_A_DG13_DA14NANNANT00.73 OP18
1526zx7-m5_A_DG13_DA14NANNANT00.70 OP18
1536zx7-m6_A_DG13_DA14NANNANT00.68 OP18
1546zx7-m7_A_DG13_DA14NANNANT00.68 OP18
1556zx7-m8_A_DG13_DA14NANNANT00.71 OP18
1566zx7-m9_A_DG13_DA14NANNANT00.72 OP18
1576zx7-m10_A_DA14_DA15NANNANT00.66 BB00
1586zx7-m11_A_DA14_DA15NANNANT00.59 BB00
1596zx7-m12_A_DA14_DA15NANNANT00.58 BB00
1606zx7-m1_A_DA14_DA15NANNANT00.58 BB00
1616zx7-m2_A_DA14_DA15NANNANT00.58 BB00
1626zx7-m3_A_DA14_DA15NANNANT00.57 BB00
1636zx7-m4_A_DA14_DA15NANNANT00.57 BB00
1646zx7-m5_A_DA14_DA15NANNANT00.58 BB00
1656zx7-m6_A_DA14_DA15NANNANT00.58 BB00
1666zx7-m7_A_DA14_DA15NANNANT00.58 BB00
1676zx7-m8_A_DA14_DA15NANNANT00.57 BB00
1686zx7-m9_A_DA14_DA15NANNANT00.58 BB00
1696zx7-m10_A_DA15_DG16BBBBB00340.44 BB00
1706zx7-m11_A_DA15_DG16BBBBB00290.46 BB00
1716zx7-m12_A_DA15_DG16BBBBB00210.50 BB00
1726zx7-m1_A_DA15_DG16BBBBB00280.47 BB00
1736zx7-m2_A_DA15_DG16BBBBB00210.50 BB00
1746zx7-m3_A_DA15_DG16BBBBB00250.48 BB00
1756zx7-m4_A_DA15_DG16BBBBB00220.49 BB00
1766zx7-m5_A_DA15_DG16BBBBB00290.47 BB00
1776zx7-m6_A_DA15_DG16BBBBB00190.51 BB00
1786zx7-m7_A_DA15_DG16BBBBB00260.48 BB00
1796zx7-m8_A_DA15_DG16BBBBB00270.47 BB00
1806zx7-m9_A_DA15_DG16BBBBB00290.47 BB00
1816zx7-m10_A_DG16_DG17BBBBB01710.24 BB01
1826zx7-m11_A_DG16_DG17BBBBB01700.25 BB01
1836zx7-m12_A_DG16_DG17BBBBB01740.23 BB01
1846zx7-m1_A_DG16_DG17BBBBB01720.24 BB01
1856zx7-m2_A_DG16_DG17BBBBB01730.23 BB01
1866zx7-m3_A_DG16_DG17BBBBB01690.25 BB01
1876zx7-m4_A_DG16_DG17BBBBB01680.26 BB01
1886zx7-m5_A_DG16_DG17BBBBB01730.24 BB01
1896zx7-m6_A_DG16_DG17BBBBB01720.24 BB01
1906zx7-m7_A_DG16_DG17BBBBB01770.22 BB01
1916zx7-m8_A_DG16_DG17BBBBB01740.23 BB01
1926zx7-m9_A_DG16_DG17BBBBB01720.24 BB01
1936zx7-m10_A_DG17_DG18NANNANT00.75 AB1S
1946zx7-m11_A_DG17_DG18NANNANT00.74 AB1S
1956zx7-m12_A_DG17_DG18NANNANT00.72 AB1S
1966zx7-m1_A_DG17_DG18NANNANT00.74 AB1S
1976zx7-m2_A_DG17_DG18NANNANT00.73 AB1S
1986zx7-m3_A_DG17_DG18NANNANT00.75 AB1S
1996zx7-m4_A_DG17_DG18NANNANT00.76 AB1S
2006zx7-m5_A_DG17_DG18NANNANT00.74 AB1S
2016zx7-m6_A_DG17_DG18NANNANT00.74 AB1S
2026zx7-m7_A_DG17_DG18NANNANT00.72 AB1S
2036zx7-m8_A_DG17_DG18NANNANT00.72 AB1S
2046zx7-m9_A_DG17_DG18NANNANT00.74 AB1S
2056zx7-m10_A_DG18_DG19NANNANT00.32 BBS1
2066zx7-m11_A_DG18_DG19NANNANT00.31 BBS1
2076zx7-m12_A_DG18_DG19NANNANT00.31 BBS1
2086zx7-m1_A_DG18_DG19NANNANT00.32 BBS1
2096zx7-m2_A_DG18_DG19NANNANT00.31 BBS1
2106zx7-m3_A_DG18_DG19NANNANT00.32 BBS1
2116zx7-m4_A_DG18_DG19NANNANT00.33 BBS1
2126zx7-m5_A_DG18_DG19NANNANT00.31 BBS1
2136zx7-m6_A_DG18_DG19NANNANT00.32 BBS1
2146zx7-m7_A_DG18_DG19NANNANT00.32 BBS1
2156zx7-m8_A_DG18_DG19NANNANT00.30 BBS1
2166zx7-m9_A_DG18_DG19NANNANT00.32 BBS1
2176zx7-m10_A_DG19_DG20NANNANT00.74 OP14
2186zx7-m11_A_DG19_DG20NANNANT00.74 OP14
2196zx7-m12_A_DG19_DG20NANNANT00.74 OP14
2206zx7-m1_A_DG19_DG20NANNANT00.74 OP14
2216zx7-m2_A_DG19_DG20NANNANT00.74 OP14
2226zx7-m3_A_DG19_DG20NANNANT00.74 OP14
2236zx7-m4_A_DG19_DG20NANNANT00.74 OP14
2246zx7-m5_A_DG19_DG20NANNANT00.75 OP14
2256zx7-m6_A_DG19_DG20NANNANT00.73 OP14
2266zx7-m7_A_DG19_DG20NANNANT00.74 OP14
2276zx7-m8_A_DG19_DG20NANNANT00.74 OP14
2286zx7-m9_A_DG19_DG20NANNANT00.74 OP14
2296zx7-m10_A_DG20_DC21NANNANT01.09 OP20
2306zx7-m11_A_DG20_DC21NANNANT01.11 OP20
2316zx7-m12_A_DG20_DC21NANNANT01.10 OP20
2326zx7-m1_A_DG20_DC21NANNANT01.11 OP20
2336zx7-m2_A_DG20_DC21NANNANT01.12 OP20
2346zx7-m3_A_DG20_DC21NANNANT01.12 OP20
2356zx7-m4_A_DG20_DC21NANNANT01.11 OP20
2366zx7-m5_A_DG20_DC21NANNANT01.13 OP20
2376zx7-m6_A_DG20_DC21NANNANT01.10 OP20
2386zx7-m7_A_DG20_DC21NANNANT01.11 OP20
2396zx7-m8_A_DG20_DC21NANNANT01.09 OP20
2406zx7-m9_A_DG20_DC21NANNANT01.11 OP20
2416zx7-m10_A_DC21_DG22NANNANT00.80 OP26
2426zx7-m11_A_DC21_DG22NANNANT00.76 OP26
2436zx7-m12_A_DC21_DG22NANNANT00.80 OP26
2446zx7-m1_A_DC21_DG22NANNANT00.78 OP26
2456zx7-m2_A_DC21_DG22NANNANT00.79 OP26
2466zx7-m3_A_DC21_DG22NANNANT00.79 OP26
2476zx7-m4_A_DC21_DG22NANNANT00.80 OP26
2486zx7-m5_A_DC21_DG22NANNANT00.77 OP26
2496zx7-m6_A_DC21_DG22NANNANT00.80 OP26
2506zx7-m7_A_DC21_DG22NANNANT00.79 OP26
2516zx7-m8_A_DC21_DG22NANNANT00.78 OP26
2526zx7-m9_A_DC21_DG22NANNANT00.80 OP26
2536zx7-m10_A_DG22_DG23SYNBBS1630.32 BBS1
2546zx7-m11_A_DG22_DG23SYNBBS1620.31 BBS1
2556zx7-m12_A_DG22_DG23SYNBBS1610.33 BBS1
2566zx7-m1_A_DG22_DG23SYNBBS1610.31 BBS1
2576zx7-m2_A_DG22_DG23SYNBBS1620.32 BBS1
2586zx7-m3_A_DG22_DG23SYNBBS1620.31 BBS1
2596zx7-m4_A_DG22_DG23SYNBBS1630.31 BBS1
2606zx7-m5_A_DG22_DG23SYNBBS1610.32 BBS1
2616zx7-m6_A_DG22_DG23SYNBBS1610.32 BBS1
2626zx7-m7_A_DG22_DG23SYNBBS1600.32 BBS1
2636zx7-m8_A_DG22_DG23SYNBBS1610.33 BBS1
2646zx7-m9_A_DG22_DG23SYNBBS1630.31 BBS1
2656zx7-m10_A_DG23_DG24NANNANT00.85 AB1S
2666zx7-m11_A_DG23_DG24NANNANT00.84 AB1S
2676zx7-m12_A_DG23_DG24NANNANT00.86 AB1S
2686zx7-m1_A_DG23_DG24NANNANT00.85 AB1S
2696zx7-m2_A_DG23_DG24NANNANT00.87 AB1S
2706zx7-m3_A_DG23_DG24NANNANT00.85 AB1S
2716zx7-m4_A_DG23_DG24NANNANT00.84 AB1S
2726zx7-m5_A_DG23_DG24NANNANT00.85 AB1S
2736zx7-m6_A_DG23_DG24NANNANT00.85 AB1S
2746zx7-m7_A_DG23_DG24NANNANT00.87 AB1S
2756zx7-m8_A_DG23_DG24NANNANT00.87 AB1S
2766zx7-m9_A_DG23_DG24NANNANT00.85 AB1S
2776zx7-m10_A_DG24_DA25NANNANT00.36 BBS1
2786zx7-m11_A_DG24_DA25NANNANT00.37 BBS1
2796zx7-m12_A_DG24_DA25NANNANT00.37 BBS1
2806zx7-m1_A_DG24_DA25NANNANT00.36 BBS1
2816zx7-m2_A_DG24_DA25NANNANT00.38 BBS1
2826zx7-m3_A_DG24_DA25NANNANT00.36 BBS1
2836zx7-m4_A_DG24_DA25NANNANT00.38 BBS1
2846zx7-m5_A_DG24_DA25NANNANT00.37 BBS1
2856zx7-m6_A_DG24_DA25NANNANT00.36 BBS1
2866zx7-m7_A_DG24_DA25NANNANT00.37 BBS1
2876zx7-m8_A_DG24_DA25NANNANT00.38 BBS1
2886zx7-m9_A_DG24_DA25NANNANT00.37 BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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