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Conformers: ABBIImiBZICOPNSYNN
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter containing 8-oxoG

Results of the assignment of 288 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016zx6-m10_A_DC1_DG2NANNANT01.38 OP26
0026zx6-m11_A_DC1_DG2NANNANT01.37 OP26
0036zx6-m12_A_DC1_DG2NANNANT01.34 OP26
0046zx6-m1_A_DC1_DG2NANNANT01.34 OP26
0056zx6-m2_A_DC1_DG2NANNANT01.36 OP26
0066zx6-m3_A_DC1_DG2NANNANT01.36 OP26
0076zx6-m4_A_DC1_DG2NANNANT01.35 OP26
0086zx6-m5_A_DC1_DG2NANNANT00.54 ZZ02
0096zx6-m6_A_DC1_DG2NANNANT01.34 OP26
0106zx6-m7_A_DC1_DG2NANNANT01.35 OP26
0116zx6-m8_A_DC1_DG2NANNANT01.36 OP26
0126zx6-m9_A_DC1_DG2NANNANT00.55 ZZ02
0136zx6-m10_A_DG2_DG3SYNBBS1230.40 BBS1
0146zx6-m11_A_DG2_DG3SYNBBS1190.42 BBS1
0156zx6-m12_A_DG2_DG3SYNBBS1390.38 BBS1
0166zx6-m1_A_DG2_DG3SYNBBS1290.39 BBS1
0176zx6-m2_A_DG2_DG3SYNBBS1190.42 BBS1
0186zx6-m3_A_DG2_DG3SYNBBS1210.41 BBS1
0196zx6-m4_A_DG2_DG3SYNBBS1400.38 BBS1
0206zx6-m5_A_DG2_DG3SYNBBS1420.38 BBS1
0216zx6-m6_A_DG2_DG3SYNBBS1390.39 BBS1
0226zx6-m7_A_DG2_DG3SYNBBS1400.38 BBS1
0236zx6-m8_A_DG2_DG3SYNBBS1170.42 BBS1
0246zx6-m9_A_DG2_DG3SYNBBS1430.39 BBS1
0256zx6-m10_A_DG3_DG4NANNANT00.63 AB1S
0266zx6-m11_A_DG3_DG4NANNANT00.63 AB1S
0276zx6-m12_A_DG3_DG4NANNANT00.63 AB1S
0286zx6-m1_A_DG3_DG4NANNANT00.62 AB1S
0296zx6-m2_A_DG3_DG4NANNANT00.64 AB1S
0306zx6-m3_A_DG3_DG4NANNANT00.64 AB1S
0316zx6-m4_A_DG3_DG4NANNANT00.64 AB1S
0326zx6-m5_A_DG3_DG4NANNANT00.62 AB1S
0336zx6-m6_A_DG3_DG4NANNANT00.64 AB1S
0346zx6-m7_A_DG3_DG4NANNANT00.63 AB1S
0356zx6-m8_A_DG3_DG4NANNANT00.64 AB1S
0366zx6-m9_A_DG3_DG4NANNANT00.63 AB1S
0376zx6-m10_A_DG4_DC5NANNANT01.14 OP18
0386zx6-m11_A_DG4_DC5NANNANT01.12 OP18
0396zx6-m12_A_DG4_DC5NANNANT01.10 OP18
0406zx6-m1_A_DG4_DC5NANNANT01.14 OP18
0416zx6-m2_A_DG4_DC5NANNANT01.12 OP18
0426zx6-m3_A_DG4_DC5NANNANT01.04 OP18
0436zx6-m4_A_DG4_DC5NANNANT01.10 OP18
0446zx6-m5_A_DG4_DC5NANNANT01.09 OP18
0456zx6-m6_A_DG4_DC5NANNANT01.10 OP18
0466zx6-m7_A_DG4_DC5NANNANT01.16 OP18
0476zx6-m8_A_DG4_DC5NANNANT01.11 OP18
0486zx6-m9_A_DG4_DC5NANNANT01.10 OP18
0496zx6-m10_A_DC5_DG6NANNANT00.60 OP20
0506zx6-m11_A_DC5_DG6NANNANT00.58 OP20
0516zx6-m12_A_DC5_DG6NANNANT00.57 OP20
0526zx6-m1_A_DC5_DG6NANNANT00.60 OP20
0536zx6-m2_A_DC5_DG6NANNANT00.58 OP20
0546zx6-m3_A_DC5_DG6NANNANT00.53 OP20
0556zx6-m4_A_DC5_DG6NANNANT00.56 OP20
0566zx6-m5_A_DC5_DG6NANNANT00.57 OP20
0576zx6-m6_A_DC5_DG6NANNANT00.57 OP20
0586zx6-m7_A_DC5_DG6NANNANT00.61 OP20
0596zx6-m8_A_DC5_DG6NANNANT00.57 OP20
0606zx6-m9_A_DC5_DG6NANNANT00.57 OP20
0616zx6-m10_A_DG6_DC7BBBBB00410.41 BB00
0626zx6-m11_A_DG6_DC7BBBBB00420.41 BB00
0636zx6-m12_A_DG6_DC7BBBBB00420.40 BB00
0646zx6-m1_A_DG6_DC7BBBBB00430.41 BB00
0656zx6-m2_A_DG6_DC7BBBBB00410.41 BB00
0666zx6-m3_A_DG6_DC7BBBBB00390.40 BB00
0676zx6-m4_A_DG6_DC7BBBBB00420.40 BB00
0686zx6-m5_A_DG6_DC7BBBBB00420.40 BB00
0696zx6-m6_A_DG6_DC7BBBBB00410.41 BB00
0706zx6-m7_A_DG6_DC7BBBBB00420.41 BB00
0716zx6-m8_A_DG6_DC7BBBBB00420.39 BB00
0726zx6-m9_A_DG6_DC7BBBBB00410.41 BB00
0736zx6-m10_A_DC7_DG8NANNANT00.84 ZZ02
0746zx6-m11_A_DC7_DG8NANNANT00.83 ZZ02
0756zx6-m12_A_DC7_DG8NANNANT00.83 ZZ02
0766zx6-m1_A_DC7_DG8NANNANT00.83 ZZ02
0776zx6-m2_A_DC7_DG8NANNANT00.83 ZZ02
0786zx6-m3_A_DC7_DG8NANNANT00.84 ZZ02
0796zx6-m4_A_DC7_DG8NANNANT00.83 ZZ02
0806zx6-m5_A_DC7_DG8NANNANT00.84 ZZ02
0816zx6-m6_A_DC7_DG8NANNANT00.83 ZZ02
0826zx6-m7_A_DC7_DG8NANNANT00.83 ZZ02
0836zx6-m8_A_DC7_DG8NANNANT00.84 ZZ02
0846zx6-m9_A_DC7_DG8NANNANT00.83 ZZ02
0856zx6-m10_A_DG8_DG9NANNANT00.82 AB1S
0866zx6-m11_A_DG8_DG9NANNANT00.81 AB1S
0876zx6-m12_A_DG8_DG9NANNANT00.82 AB1S
0886zx6-m1_A_DG8_DG9NANNANT00.81 AB1S
0896zx6-m2_A_DG8_DG9NANNANT00.81 AB1S
0906zx6-m3_A_DG8_DG9NANNANT00.81 AB1S
0916zx6-m4_A_DG8_DG9NANNANT00.82 AB1S
0926zx6-m5_A_DG8_DG9NANNANT00.82 AB1S
0936zx6-m6_A_DG8_DG9NANNANT00.81 AB1S
0946zx6-m7_A_DG8_DG9NANNANT00.81 AB1S
0956zx6-m8_A_DG8_DG9NANNANT00.82 AB1S
0966zx6-m9_A_DG8_DG9NANNANT00.82 AB1S
0976zx6-m10_A_DG9_DG10NANNANT00.31 BBS1
0986zx6-m11_A_DG9_DG10NANNANT00.28 BBS1
0996zx6-m12_A_DG9_DG10NANNANT00.29 BBS1
1006zx6-m1_A_DG9_DG10NANNANT00.29 BBS1
1016zx6-m2_A_DG9_DG10NANNANT00.28 BBS1
1026zx6-m3_A_DG9_DG10NANNANT00.26 BBS1
1036zx6-m4_A_DG9_DG10NANNANT00.30 BBS1
1046zx6-m5_A_DG9_DG10NANNANT00.30 BBS1
1056zx6-m6_A_DG9_DG10NANNANT00.30 BBS1
1066zx6-m7_A_DG9_DG10NANNANT00.30 BBS1
1076zx6-m8_A_DG9_DG10NANNANT00.29 BBS1
1086zx6-m9_A_DG9_DG10NANNANT00.30 BBS1
1096zx6-m10_A_DG10_DA11NANNANT01.06 AA02
1106zx6-m11_A_DG10_DA11NANNANT01.08 AA02
1116zx6-m12_A_DG10_DA11NANNANT01.03 AA02
1126zx6-m1_A_DG10_DA11NANNANT01.02 AA02
1136zx6-m2_A_DG10_DA11NANNANT01.17 BB01
1146zx6-m3_A_DG10_DA11NANNANT01.26 BB00
1156zx6-m4_A_DG10_DA11NANNANT01.04 AA02
1166zx6-m5_A_DG10_DA11NANNANT01.02 AA02
1176zx6-m6_A_DG10_DA11NANNANT01.04 AA02
1186zx6-m7_A_DG10_DA11NANNANT01.03 AA02
1196zx6-m8_A_DG10_DA11NANNANT01.12 AA02
1206zx6-m9_A_DG10_DA11NANNANT01.04 AA02
1216zx6-m10_A_DA11_DG12NANNANT01.06 BB01
1226zx6-m11_A_DA11_DG12NANNANT00.91 AA13
1236zx6-m12_A_DA11_DG12NANNANT01.00 BB01
1246zx6-m1_A_DA11_DG12NANNANT01.01 BB01
1256zx6-m2_A_DA11_DG12NANNANT00.95 AA12
1266zx6-m3_A_DA11_DG12NANNANT01.17 AA13
1276zx6-m4_A_DA11_DG12NANNANT01.01 BB01
1286zx6-m5_A_DA11_DG12NANNANT00.98 BB01
1296zx6-m6_A_DA11_DG12NANNANT01.00 BB01
1306zx6-m7_A_DA11_DG12NANNANT00.99 BB01
1316zx6-m8_A_DA11_DG12NANNANT01.05 AA13
1326zx6-m9_A_DA11_DG12NANNANT00.99 BB01
1336zx6-m10_A_DG12_DG13NANNANT00.90 AA07
1346zx6-m11_A_DG12_DG13BBBBB00410.44 BB00
1356zx6-m12_A_DG12_DG13NANNANT00.88 AA07
1366zx6-m1_A_DG12_DG13NANNANT00.88 AA07
1376zx6-m2_A_DG12_DG13BBBBB00430.41 BB00
1386zx6-m3_A_DG12_DG13BBBBB00610.29 BB00
1396zx6-m4_A_DG12_DG13NANNANT00.86 AA07
1406zx6-m5_A_DG12_DG13NANNANT00.87 AA07
1416zx6-m6_A_DG12_DG13NANNANT00.88 AA07
1426zx6-m7_A_DG12_DG13NANNANT00.89 AA07
1436zx6-m8_A_DG12_DG13BBBBB00460.35 BB00
1446zx6-m9_A_DG12_DG13NANNANT00.87 AA07
1456zx6-m10_A_DG13_DA14NANNANT00.77 BB00
1466zx6-m11_A_DG13_DA14NANNANT00.89 BB00
1476zx6-m12_A_DG13_DA14NANNANT00.78 BB00
1486zx6-m1_A_DG13_DA14NANNANT00.78 BB00
1496zx6-m2_A_DG13_DA14NANNANT00.89 BB00
1506zx6-m3_A_DG13_DA14NANNANT00.68 BB16
1516zx6-m4_A_DG13_DA14NANNANT00.82 BB00
1526zx6-m5_A_DG13_DA14NANNANT00.81 BB00
1536zx6-m6_A_DG13_DA14NANNANT00.79 BB00
1546zx6-m7_A_DG13_DA14NANNANT00.78 BB00
1556zx6-m8_A_DG13_DA14NANNANT00.69 BB16
1566zx6-m9_A_DG13_DA14NANNANT00.83 BB00
1576zx6-m10_A_DA14_DA15BBBBB00330.38 BB00
1586zx6-m11_A_DA14_DA15BBBBB00350.44 BB00
1596zx6-m12_A_DA14_DA15BBBBB00290.37 BB00
1606zx6-m1_A_DA14_DA15BBBBB00300.37 BB00
1616zx6-m2_A_DA14_DA15BBBBB00350.45 BB00
1626zx6-m3_A_DA14_DA15BBBBB00340.45 BB00
1636zx6-m4_A_DA14_DA15BBBBB00350.40 BB00
1646zx6-m5_A_DA14_DA15BBBBB00310.38 BB00
1656zx6-m6_A_DA14_DA15BBBBB00300.37 BB00
1666zx6-m7_A_DA14_DA15BBBBB00280.37 BB00
1676zx6-m8_A_DA14_DA15BBBBB00370.43 BB00
1686zx6-m9_A_DA14_DA15BBBBB00330.41 BB00
1696zx6-m10_A_DA15_DG16NANNANT00.94 ZZ02
1706zx6-m11_A_DA15_DG16NANNANT00.89 ZZ02
1716zx6-m12_A_DA15_DG16NANNANT00.97 ZZ02
1726zx6-m1_A_DA15_DG16NANNANT00.97 ZZ02
1736zx6-m2_A_DA15_DG16NANNANT00.88 ZZ02
1746zx6-m3_A_DA15_DG16NANNANT00.88 ZZ02
1756zx6-m4_A_DA15_DG16NANNANT00.92 ZZ02
1766zx6-m5_A_DA15_DG16NANNANT00.94 ZZ02
1776zx6-m6_A_DA15_DG16NANNANT00.94 ZZ02
1786zx6-m7_A_DA15_DG16NANNANT00.97 ZZ02
1796zx6-m8_A_DA15_DG16NANNANT00.89 ZZ02
1806zx6-m9_A_DA15_DG16NANNANT00.90 ZZ02
1816zx6-m10_A_DG16_DG17SYNBBS1670.28 BBS1
1826zx6-m11_A_DG16_DG17SYNBBS1670.28 BBS1
1836zx6-m12_A_DG16_DG17SYNBBS1650.29 BBS1
1846zx6-m1_A_DG16_DG17SYNBBS1630.29 BBS1
1856zx6-m2_A_DG16_DG17SYNBBS1640.28 BBS1
1866zx6-m3_A_DG16_DG17SYNBBS1630.28 BBS1
1876zx6-m4_A_DG16_DG17SYNBBS1640.30 BBS1
1886zx6-m5_A_DG16_DG17SYNBBS1660.29 BBS1
1896zx6-m6_A_DG16_DG17SYNBBS1620.28 BBS1
1906zx6-m7_A_DG16_DG17SYNBBS1670.27 BBS1
1916zx6-m8_A_DG16_DG17SYNBBS1630.29 BBS1
1926zx6-m9_A_DG16_DG17SYNBBS1610.29 BBS1
1936zx6-m10_A_DG17_DG18NANNANT00.87 AB1S
1946zx6-m11_A_DG17_DG18NANNANT00.83 AB1S
1956zx6-m12_A_DG17_DG18NANNANT00.86 AB1S
1966zx6-m1_A_DG17_DG18NANNANT00.86 AB1S
1976zx6-m2_A_DG17_DG18NANNANT00.82 AB1S
1986zx6-m3_A_DG17_DG18NANNANT00.82 AB1S
1996zx6-m4_A_DG17_DG18NANNANT00.86 AB1S
2006zx6-m5_A_DG17_DG18NANNANT00.86 AB1S
2016zx6-m6_A_DG17_DG18NANNANT00.81 AB1S
2026zx6-m7_A_DG17_DG18NANNANT00.82 AB1S
2036zx6-m8_A_DG17_DG18NANNANT00.82 AB1S
2046zx6-m9_A_DG17_DG18NANNANT00.81 AB1S
2056zx6-m10_A_DG18_8OG19NANNANT00.61 AAS1
2066zx6-m11_A_DG18_8OG19NANNANT00.66 AAS1
2076zx6-m12_A_DG18_8OG19NANNANT00.61 AAS1
2086zx6-m1_A_DG18_8OG19NANNANT00.61 AAS1
2096zx6-m2_A_DG18_8OG19NANNANT00.67 AAS1
2106zx6-m3_A_DG18_8OG19NANNANT00.67 AAS1
2116zx6-m4_A_DG18_8OG19NANNANT00.61 AAS1
2126zx6-m5_A_DG18_8OG19NANNANT00.61 AAS1
2136zx6-m6_A_DG18_8OG19NANNANT00.68 AAS1
2146zx6-m7_A_DG18_8OG19NANNANT00.67 AAS1
2156zx6-m8_A_DG18_8OG19NANNANT00.67 AAS1
2166zx6-m9_A_DG18_8OG19NANNANT00.68 AAS1
2176zx6-m10_A_8OG19_DG20NANNANT00.54 ZZS2
2186zx6-m11_A_8OG19_DG20NANNANT00.66 ZZS1
2196zx6-m12_A_8OG19_DG20NANNANT00.54 ZZS2
2206zx6-m1_A_8OG19_DG20NANNANT00.55 ZZS2
2216zx6-m2_A_8OG19_DG20NANNANT00.66 ZZS1
2226zx6-m3_A_8OG19_DG20NANNANT00.66 ZZS1
2236zx6-m4_A_8OG19_DG20NANNANT00.51 ZZS2
2246zx6-m5_A_8OG19_DG20NANNANT00.58 ZZS2
2256zx6-m6_A_8OG19_DG20NANNANT00.67 ZZS1
2266zx6-m7_A_8OG19_DG20NANNANT00.65 ZZS1
2276zx6-m8_A_8OG19_DG20NANNANT00.67 ZZS1
2286zx6-m9_A_8OG19_DG20NANNANT00.67 ZZS1
2296zx6-m10_A_DG20_DC21NANNANT00.52 AB1S
2306zx6-m11_A_DG20_DC21NANNANT00.54 AB1S
2316zx6-m12_A_DG20_DC21NANNANT00.52 AB1S
2326zx6-m1_A_DG20_DC21NANNANT00.53 AB1S
2336zx6-m2_A_DG20_DC21NANNANT00.54 AB1S
2346zx6-m3_A_DG20_DC21NANNANT00.54 AB1S
2356zx6-m4_A_DG20_DC21NANNANT00.52 AB1S
2366zx6-m5_A_DG20_DC21NANNANT00.53 AB1S
2376zx6-m6_A_DG20_DC21NANNANT00.54 AB1S
2386zx6-m7_A_DG20_DC21NANNANT00.54 AB1S
2396zx6-m8_A_DG20_DC21NANNANT00.54 AB1S
2406zx6-m9_A_DG20_DC21NANNANT00.54 AB1S
2416zx6-m10_A_DC21_DG22NANNANT00.45 BBS1
2426zx6-m11_A_DC21_DG22NANNANT00.48 BBS1
2436zx6-m12_A_DC21_DG22NANNANT00.45 BBS1
2446zx6-m1_A_DC21_DG22NANNANT00.45 BBS1
2456zx6-m2_A_DC21_DG22NANNANT00.50 BBS1
2466zx6-m3_A_DC21_DG22NANNANT00.50 BBS1
2476zx6-m4_A_DC21_DG22NANNANT00.47 BBS1
2486zx6-m5_A_DC21_DG22NANNANT00.43 BBS1
2496zx6-m6_A_DC21_DG22NANNANT00.49 BBS1
2506zx6-m7_A_DC21_DG22NANNANT00.50 BBS1
2516zx6-m8_A_DC21_DG22NANNANT00.49 BBS1
2526zx6-m9_A_DC21_DG22NANNANT00.48 BBS1
2536zx6-m10_A_DG22_DG23NANNANT00.78 AB1S
2546zx6-m11_A_DG22_DG23NANNANT00.80 AB1S
2556zx6-m12_A_DG22_DG23NANNANT00.77 AB1S
2566zx6-m1_A_DG22_DG23NANNANT00.78 AB1S
2576zx6-m2_A_DG22_DG23NANNANT00.80 AB1S
2586zx6-m3_A_DG22_DG23NANNANT00.80 AB1S
2596zx6-m4_A_DG22_DG23NANNANT00.78 AB1S
2606zx6-m5_A_DG22_DG23NANNANT00.77 AB1S
2616zx6-m6_A_DG22_DG23NANNANT00.80 AB1S
2626zx6-m7_A_DG22_DG23NANNANT00.80 AB1S
2636zx6-m8_A_DG22_DG23NANNANT00.81 AB1S
2646zx6-m9_A_DG22_DG23NANNANT00.80 AB1S
2656zx6-m10_A_DG23_DG24NANNANT00.42 BBS1
2666zx6-m11_A_DG23_DG24NANNANT00.39 BBS1
2676zx6-m12_A_DG23_DG24NANNANT00.39 BBS1
2686zx6-m1_A_DG23_DG24NANNANT00.38 BBS1
2696zx6-m2_A_DG23_DG24NANNANT00.39 BBS1
2706zx6-m3_A_DG23_DG24NANNANT00.38 BBS1
2716zx6-m4_A_DG23_DG24NANNANT00.40 BBS1
2726zx6-m5_A_DG23_DG24NANNANT00.40 BBS1
2736zx6-m6_A_DG23_DG24NANNANT00.39 BBS1
2746zx6-m7_A_DG23_DG24NANNANT00.39 BBS1
2756zx6-m8_A_DG23_DG24NANNANT00.38 BBS1
2766zx6-m9_A_DG23_DG24NANNANT00.38 BBS1
2776zx6-m10_A_DG24_DA25NANNANT01.02 OP20
2786zx6-m11_A_DG24_DA25NANNANT01.07 OP20
2796zx6-m12_A_DG24_DA25OPNOP20630.47 OP20
2806zx6-m1_A_DG24_DA25OPNOP20530.51 OP20
2816zx6-m2_A_DG24_DA25NANNANT01.06 OP20
2826zx6-m3_A_DG24_DA25NANNANT01.09 OP20
2836zx6-m4_A_DG24_DA25NANNANT01.02 OP20
2846zx6-m5_A_DG24_DA25NANNANT01.02 OP20
2856zx6-m6_A_DG24_DA25OPNOP20700.37 OP20
2866zx6-m7_A_DG24_DA25NANNANT00.45 OP20
2876zx6-m8_A_DG24_DA25NANNANT01.05 OP20
2886zx6-m9_A_DG24_DA25NANNANT01.04 OP20

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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