Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of E. coli RNA helicase HrpA in complex with RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6zww_B_U4_U5 | NAN | NANT | 0 | 0.90 |
| 02 | 6zww_B_U5_U6 | NAN | NANT | 0 | 0.93 |
| 03 | 6zww_B_U6_U7 | NAN | NANT | 0 | 0.72 |
| 04 | 6zww_B_U7_U8 | NAN | NANT | 0 | 0.87 |
| 05 | 6zww_B_U8_U9 | NAN | NANT | 0 | 0.96 |
| 06 | 6zww_B_U9_U10 | NAN | NANT | 0 | 0.87 |
| 07 | 6zww_B_U10_U11 | AAA | AA04 | 42 | 0.32 |
| 08 | 6zww_B_U11_U12 | NAN | NANT | 0 | 0.36 |
| 09 | 6zww_B_U12_U13 | AAA | AA00 | 54 | 0.28 |
| 10 | 6zww_B_U13_U14 | A-B | AB04 | 30 | 0.49 |
| 11 | 6zww_B_U14_U15 | NAN | NANT | 0 | 1.28 |
| 12 | 6zww_D_U4_U5 | NAN | NANT | 0 | 1.67 |
| 13 | 6zww_D_U5_U6 | NAN | NANT | 0 | 0.47 |
| 14 | 6zww_D_U6_U7 | NAN | NANT | 0 | 0.54 |
| 15 | 6zww_D_U7_U8 | NAN | NANT | 0 | 0.74 |
| 16 | 6zww_D_U8_U9 | NAN | NANT | 0 | 0.52 |
| 17 | 6zww_D_U9_U10 | NAN | NANT | 0 | 2.26 |
| 18 | 6zww_D_U10_U11 | AAA | AA04 | 42 | 0.35 |
| 19 | 6zww_D_U11_U12 | NAN | NANT | 0 | 0.40 |
| 20 | 6zww_D_U12_U13 | NAN | NANT | 0 | 0.52 |
| 21 | 6zww_D_U13_U14 | NAN | NANT | 0 | 0.23 |
| 22 | 6zww_D_U14_U15 | NAN | NANT | 0 | 1.30 |
| 23 | 6zww_F_U6_U7 | NAN | NANT | 0 | 1.06 |
| 24 | 6zww_F_U7_U8 | NAN | NANT | 0 | 0.98 |
| 25 | 6zww_F_U8_U9 | NAN | NANT | 0 | 1.33 |
| 26 | 6zww_F_U9_U10 | NAN | NANT | 0 | 1.20 |
| 27 | 6zww_F_U10_U11 | AAA | AA04 | 28 | 0.39 |
| 28 | 6zww_F_U11_U12 | AAw | AA11 | 33 | 0.44 |
| 29 | 6zww_F_U12_U13 | AAA | AA08 | 40 | 0.51 |
| 30 | 6zww_F_U13_U14 | NAN | NANT | 0 | 0.58 |
| 31 | 6zww_F_U14_U15 | NAN | NANT | 0 | 1.31 |
| 32 | 6zww_H_U6_U7 | NAN | NANT | 0 | 1.07 |
| 33 | 6zww_H_U7_U8 | NAN | NANT | 0 | 0.90 |
| 34 | 6zww_H_U8_U9 | NAN | NANT | 0 | 0.93 |
| 35 | 6zww_H_U9_U10 | NAN | NANT | 0 | 1.04 |
| 36 | 6zww_H_U10_U11 | AAw | AA01 | 82 | 0.22 |
| 37 | 6zww_H_U11_U12 | AAw | AA11 | 26 | 0.50 |
| 38 | 6zww_H_U12_U13 | NAN | NANT | 0 | 0.30 |
| 39 | 6zww_H_U13_U14 | NAN | NANT | 0 | 0.51 |
| 40 | 6zww_H_U14_U15 | NAN | NANT | 0 | 1.11 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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