Conformers:
ABBIImiBZICOPNSYNN
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Structure of RcsB from Salmonella enterica serovar Typhimurium bound to promoter P1flhDC in the presence of phosphomimetic BeF3-
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6zix_E_DG2_DA3 | NAN | NANT | 0 | 0.61 |
| 02 | 6zix_E_DA3_DA4 | NAN | NANT | 0 | 0.34 |
| 03 | 6zix_E_DA4_DT5 | B-A | BA05 | 49 | 0.27 |
| 04 | 6zix_E_DT5_DT6 | B-A | BA05 | 52 | 0.25 |
| 05 | 6zix_E_DT6_DA7 | NAN | NANT | 0 | 0.56 |
| 06 | 6zix_E_DA7_DG8 | NAN | NANT | 0 | 0.44 |
| 07 | 6zix_E_DG8_DG9 | B12 | BB04 | 64 | 0.29 |
| 08 | 6zix_E_DG9_DA10 | BBB | BB00 | 54 | 0.28 |
| 09 | 6zix_E_DA10_DA11 | BBB | BB00 | 56 | 0.31 |
| 10 | 6zix_E_DA11_DA12 | BBB | BB00 | 78 | 0.32 |
| 11 | 6zix_E_DA12_DA13 | BBB | BB01 | 76 | 0.26 |
| 12 | 6zix_E_DA13_DA14 | B-A | BA01 | 55 | 0.19 |
| 13 | 6zix_E_DA14_DT15 | A-B | AB03 | 74 | 0.35 |
| 14 | 6zix_E_DT15_DC16 | BBB | BB00 | 74 | 0.25 |
| 15 | 6zix_E_DC16_DT17 | miB | BB13 | 79 | 0.21 |
| 16 | 6zix_E_DT17_DT18 | BBB | BB01 | 19 | 0.57 |
| 17 | 6zix_E_DT18_DA19 | NAN | NANT | 0 | 0.34 |
| 18 | 6zix_E_DA19_DG20 | B-A | BA08 | 73 | 0.30 |
| 19 | 6zix_E_DG20_DG21 | NAN | NANT | 0 | 0.45 |
| 20 | 6zix_E_DG21_DC22 | NAN | NANT | 0 | 0.47 |
| 21 | 6zix_E_DC22_DG23 | NAN | NANT | 0 | 0.70 |
| 22 | 6zix_F_DC17_DG18 | NAN | NANT | 0 | 0.56 |
| 23 | 6zix_F_DG18_DC19 | B-A | BA01 | 14 | 0.41 |
| 24 | 6zix_F_DC19_DC20 | NAN | NANT | 0 | 0.35 |
| 25 | 6zix_F_DC20_DT21 | NAN | NANT | 0 | 0.26 |
| 26 | 6zix_F_DT21_DA22 | AAA | AA02 | 16 | 0.53 |
| 27 | 6zix_F_DA22_DA23 | A-B | AB01 | 29 | 0.30 |
| 28 | 6zix_F_DA23_DG24 | NAN | NANT | 0 | 0.54 |
| 29 | 6zix_F_DG24_DA25 | A-B | AB05 | 17 | 0.25 |
| 30 | 6zix_F_DA25_DT26 | BBw | BB02 | 63 | 0.21 |
| 31 | 6zix_F_DT26_DT27 | BBB | BB01 | 59 | 0.28 |
| 32 | 6zix_F_DT27_DT28 | BBB | BB01 | 65 | 0.26 |
| 33 | 6zix_F_DT28_DT29 | BBB | BB01 | 44 | 0.28 |
| 34 | 6zix_F_DT29_DT30 | NAN | NANT | 0 | 0.55 |
| 35 | 6zix_F_DT30_DC31 | A-B | AB03 | 40 | 0.41 |
| 36 | 6zix_F_DC31_DC32 | BBB | BB00 | 92 | 0.11 |
| 37 | 6zix_F_DC32_DT33 | B-A | BA05 | 89 | 0.19 |
| 38 | 6zix_F_DT33_DA34 | A-B | AB03 | 81 | 0.33 |
| 39 | 6zix_F_DA34_DA35 | B-A | BA08 | 69 | 0.25 |
| 40 | 6zix_F_DA35_DT36 | AAw | AA01 | 38 | 0.28 |
| 41 | 6zix_F_DT36_DT37 | NAN | NANT | 0 | 0.46 |
| 42 | 6zix_F_DT37_DC38 | A-B | AB01 | 66 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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