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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the DNA-binding domain of the Nucleoid Occlusion Factor (Noc) complexed to the Noc-binding site (NBS)

Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016y93_C_DG1_DG2B12BB04470.18 BB04
026y93_C_DG2_DA3BBBBB00760.17 BB00
036y93_C_DA3_DT4BBBBB00830.18 BB00
046y93_C_DT4_DA5B12BB04750.21 BB04
056y93_C_DA5_DT6BBBBB00390.30 BB00
066y93_C_DT6_DT7BBBBB00580.29 BB00
076y93_C_DT7_DT8BBBBB01940.15 BB01
086y93_C_DT8_DC9BBBBB00680.15 BB00
096y93_C_DC9_DC10BB2BB07820.28 BB07
106y93_C_DC10_DC11B-ABA05500.17 BA05
116y93_C_DC11_DG12A-BAB03830.25 AB03
126y93_C_DG12_DG13BB2BB07730.22 BB07
136y93_C_DG13_DG14NANNANT00.40 BB10
146y93_C_DG14_DA15BB2BB07760.12 BB07
156y93_C_DA15_DA16B12BB04630.21 BB04
166y93_C_DA16_DA17BBBBB00940.11 BB00
176y93_C_DA17_DT18B-ABA05820.23 BA05
186y93_C_DT18_DA19BBBBB01170.31 BB01
196y93_C_DA19_DT20BBBBB00680.20 BB00
206y93_C_DT20_DC21BBBBB00700.22 BB00
216y93_C_DC21_DC22miBBB10380.29 BB10
226y93_D_DG1_DG2B12BB04490.18 BB04
236y93_D_DG2_DA3BBBBB00780.16 BB00
246y93_D_DA3_DT4BBBBB00830.18 BB00
256y93_D_DT4_DA5B12BB04750.21 BB04
266y93_D_DA5_DT6BBBBB00390.30 BB00
276y93_D_DT6_DT7BBBBB00590.29 BB00
286y93_D_DT7_DT8BBBBB01940.14 BB01
296y93_D_DT8_DC9BBBBB00690.15 BB00
306y93_D_DC9_DC10BB2BB07800.28 BB07
316y93_D_DC10_DC11B-ABA05500.18 BA05
326y93_D_DC11_DG12A-BAB03810.25 AB03
336y93_D_DG12_DG13BB2BB07750.21 BB07
346y93_D_DG13_DG14NANNANT00.40 BB10
356y93_D_DG14_DA15BB2BB07750.13 BB07
366y93_D_DA15_DA16B12BB04620.21 BB04
376y93_D_DA16_DA17BBBBB00940.11 BB00
386y93_D_DA17_DT18B-ABA05820.23 BA05
396y93_D_DT18_DA19BBBBB01170.32 BB01
406y93_D_DA19_DT20BBBBB00660.19 BB00
416y93_D_DT20_DC21BBBBB00690.22 BB00
426y93_D_DC21_DC22miBBB10390.29 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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