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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of phenylalanine tRNA from Escherichia coli

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016y3g_F_G1_C2NANNANT01.35 OP24
026y3g_F_C2_C3AAwAA11830.25 AA11
036y3g_F_C3_C4AAAAA03150.53 AA03
046y3g_F_C4_G5AAAAA00660.24 AA00
056y3g_F_G5_G6NANNANT00.70 AA05
066y3g_F_G6_A7A-BAB05630.23 AB05
076y3g_F_A7_4SU8OPNOP11640.47 OP11
086y3g_F_4SU8_A9NANNANT00.94 IC02
096y3g_F_A9_G10NANNANT01.15 OP26
106y3g_F_G10_C11AAAAA08310.34 AA08
116y3g_F_C11_U12NANNANT00.40 AA04
126y3g_F_U12_C13AAwAA01750.18 AA01
136y3g_F_C13_A14NANNANT01.01 AB02
146y3g_F_A14_G15AAwAA05450.32 AA05
156y3g_F_G15_H2U16NANNANT01.55 AA11
166y3g_F_H2U16_C17NANNANT01.15 OP29
176y3g_F_C17_G18NANNANT02.03 ZZS2
186y3g_F_G18_G19ICLIC06250.48 IC06
196y3g_F_G19_H2U20NANNANT00.99 OP16
206y3g_F_H2U20_A21NANNANT02.46 OP01
216y3g_F_A21_G22NANNANT00.83 AB05
226y3g_F_G22_A23NANNANT00.44 BA13
236y3g_F_A23_G24AAAAA08870.19 AA08
246y3g_F_G24_C25AAAAA08880.12 AA08
256y3g_F_C25_A26AAAAA08700.29 AA08
266y3g_F_A26_G27AAAAA00350.39 AA00
276y3g_F_G27_G28NANNANT00.45 AA00
286y3g_F_G28_G29NANNANT00.31 AA10
296y3g_F_G29_G30AAwAA11610.39 AA11
306y3g_F_G30_A31AAAAA08450.25 AA08
316y3g_F_U33_G34OPNOP04860.24 OP04
326y3g_F_G34_A35AAAAA08690.32 AA08
336y3g_F_A35_A36AAwAA01500.21 AA01
346y3g_F_A36_A37AAAAA08790.29 AA08
356y3g_F_A37_A38NANNANT00.44 AB2S
366y3g_F_C40_C41AAAAA00910.15 AA00
376y3g_F_C41_C42AAAAA00750.20 AA00
386y3g_F_C42_C43AAAAA00920.24 AA00
396y3g_F_C43_G44ICLIC02830.27 IC02
406y3g_F_G44_U45NANNANT00.70 OP13
416y3g_F_U45_G46OPNOP11700.32 OP11
426y3g_F_G46_3AU47NANNANT02.04 OP01
436y3g_F_3AU47_C48NANNANT00.43 OP28
446y3g_F_C48_C49NANNANT01.43 OP05
456y3g_F_C49_U50AAAAA08690.26 AA08
466y3g_F_U50_U51AAAAA00650.27 AA00
476y3g_F_U51_G52AAAAA00610.20 AA00
486y3g_F_G52_G53AAAAA00250.30 AA00
496y3g_F_G53_5MU54AAAAA04370.43 AA04
506y3g_F_C56_G57AAAAA00590.38 AA00
516y3g_F_G57_A58ICLIC01760.40 IC01
526y3g_F_A58_U59NANNANT00.39 OP25
536y3g_F_U59_U60A-BAB05280.41 AB05
546y3g_F_U60_C61OPNOP12870.10 OP12
556y3g_F_C61_C62AAAAA08330.35 AA08
566y3g_F_C62_G63AAAAA00770.23 AA00
576y3g_F_G63_A64AAAAA00850.15 AA00
586y3g_F_A64_G65AAAAA00890.21 AA00
596y3g_F_G65_U66AAAAA00240.32 AA00
606y3g_F_U66_C67AAwAA01110.34 AA01
616y3g_F_C67_C68AAAAA08830.21 AA08
626y3g_F_C68_G69AAAAA00740.15 AA00
636y3g_F_G69_G70NANNANT00.74 IC03
646y3g_F_G70_G71NANNANT00.80 AB02
656y3g_F_G71_C72AAwAA01450.29 AA01
666y3g_F_C72_A73AAwAA05140.43 AA05
676y3g_F_A73_C74NANNANT00.80 AA11
686y3g_F_C74_C75NANNANT01.55 OP06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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