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Conformers: ABBIImiBZICOPNSYNN
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Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016xup_R_DA1_DT2NANNANT00.93 OP05
026xup_R_DT2_DC3AAAAA00380.45 AA00
036xup_R_DC3_DG4AAwAA01700.28 AA01
046xup_R_DG4_DT5NANNANT00.59 AA11
056xup_R_DT5_DG6BBBBB00500.52 BB00
066xup_R_DG6_DG7B-ABA01240.21 BA01
076xup_S_DA10_DC11NANNANT00.61 AA01
086xup_S_DC11_DG12BBBBB00900.31 BB00
096xup_S_DG12_DA13BBBBB00920.14 BB00
106xup_S_DA13_DT14NANNANT01.35 AB04
116xup_P_DA1_DT2NANNANT01.03 OP05
126xup_P_DT2_DC3NANNANT00.47 AB04
136xup_P_DC3_DG4NANNANT00.30 AA01
146xup_P_DG4_DT5A-BAB05490.21 AB05
156xup_P_DT5_DG6BBwBB02430.25 BB02
166xup_Q_DC8_DC9BBwBB11590.40 BB11
176xup_Q_DC9_DA10BBBBB00140.54 BB00
186xup_Q_DA10_DC11miBBB15490.20 BB15
196xup_Q_DC11_DG12BBBBB00570.22 BB00
206xup_Q_DG12_DA13B12BB04890.21 BB04
216xup_Q_DA13_DT14NANNANT01.44 OP04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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