Conformers:
ABBIImiBZICOPNSYNN
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Archaeoglobus fulgidus Argonaute protein with DNA oligoduplex 5'-pATCGTGGCCACGAT
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6xu0_R_DA1_DT2 | NAN | NANT | 0 | 0.90 |
| 02 | 6xu0_R_DT2_DC3 | AAw | AA01 | 73 | 0.24 |
| 03 | 6xu0_R_DC3_DG4 | NAN | NANT | 0 | 1.34 |
| 04 | 6xu0_R_DG4_DT5 | A-B | AB03 | 47 | 0.37 |
| 05 | 6xu0_R_DT5_DG6 | BBB | BB00 | 65 | 0.27 |
| 06 | 6xu0_R_DG6_DG7 | NAN | NANT | 0 | 0.51 |
| 07 | 6xu0_S_DC9_DA10 | NAN | NANT | 0 | 0.56 |
| 08 | 6xu0_S_DA10_DC11 | NAN | NANT | 0 | 0.62 |
| 09 | 6xu0_S_DC11_DG12 | BBB | BB00 | 55 | 0.34 |
| 10 | 6xu0_S_DG12_DA13 | BBB | BB00 | 84 | 0.19 |
| 11 | 6xu0_S_DA13_DT14 | NAN | NANT | 0 | 1.40 |
| 12 | 6xu0_P_DA1_DT2 | NAN | NANT | 0 | 1.00 |
| 13 | 6xu0_P_DT2_DC3 | A-B | AB01 | 13 | 0.54 |
| 14 | 6xu0_P_DC3_DG4 | BBw | BB02 | 58 | 0.28 |
| 15 | 6xu0_P_DG4_DT5 | BBB | BB00 | 64 | 0.23 |
| 16 | 6xu0_P_DT5_DG6 | miB | BB10 | 90 | 0.17 |
| 17 | 6xu0_P_DG6_DG7 | BBB | BB00 | 44 | 0.38 |
| 18 | 6xu0_Q_DC8_DC9 | NAN | NANT | 0 | 0.38 |
| 19 | 6xu0_Q_DC9_DA10 | BBB | BB00 | 37 | 0.38 |
| 20 | 6xu0_Q_DA10_DC11 | NAN | NANT | 0 | 0.50 |
| 21 | 6xu0_Q_DC11_DG12 | BBB | BB00 | 42 | 0.44 |
| 22 | 6xu0_Q_DG12_DA13 | BBB | BB00 | 49 | 0.20 |
| 23 | 6xu0_Q_DA13_DT14 | NAN | NANT | 0 | 1.04 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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