Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of Pseudorabies virus
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6xrq_B_G1_G2 | NAN | NANT | 0 | 0.48 |
| 02 | 6xrq_B_G2_C3 | NAN | NANT | 0 | 0.56 |
| 03 | 6xrq_B_C3_U4 | NAN | NANT | 0 | 0.64 |
| 04 | 6xrq_B_U4_C5 | NAN | NANT | 0 | 0.90 |
| 05 | 6xrq_B_C5_G6 | NAN | NANT | 0 | 0.40 |
| 06 | 6xrq_B_G6_G.A7 | NAN | NANT | 0 | 0.21 |
| 07 | 6xrq_B_G6_G.B7 | NAN | NANT | 0 | 0.34 |
| 08 | 6xrq_B_G.A7_C8 | NAN | NANT | 0 | 0.96 |
| 09 | 6xrq_B_G.B7_C8 | NAN | NANT | 0 | 1.01 |
| 10 | 6xrq_B_C8_G9 | NAN | NANT | 0 | 1.26 |
| 11 | 6xrq_B_G9_G10 | B12 | BB04 | 66 | 0.36 |
| 12 | 6xrq_B_G10_C11 | NAN | NANT | 0 | 1.60 |
| 13 | 6xrq_B_C11_G12 | OPN | OP29 | 14 | 0.53 |
| 14 | 6xrq_B_G12_G13 | A-B | AB05 | 43 | 0.25 |
| 15 | 6xrq_B_G13_A14 | NAN | NANT | 0 | 1.25 |
| 16 | 6xrq_A_G1_G2 | ZZZ | ZZS2 | 23 | 0.41 |
| 17 | 6xrq_A_G2_C3 | OPN | OP20 | 39 | 0.34 |
| 18 | 6xrq_A_C3_U4 | NAN | NANT | 0 | 0.37 |
| 19 | 6xrq_A_U4_C5 | NAN | NANT | 0 | 1.03 |
| 20 | 6xrq_A_C5_G6 | NAN | NANT | 0 | 0.45 |
| 21 | 6xrq_A_G6_G7 | NAN | NANT | 0 | 0.29 |
| 22 | 6xrq_A_G7_C8 | NAN | NANT | 0 | 1.02 |
| 23 | 6xrq_A_C8_G9 | NAN | NANT | 0 | 1.15 |
| 24 | 6xrq_A_G9_G10 | B12 | BB04 | 71 | 0.23 |
| 25 | 6xrq_A_G10_C11 | NAN | NANT | 0 | 1.46 |
| 26 | 6xrq_A_C11_G12 | NAN | NANT | 0 | 0.82 |
| 27 | 6xrq_A_G12_G13 | AAA | AA00 | 68 | 0.27 |
| 28 | 6xrq_A_G13_A14 | NAN | NANT | 0 | 1.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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