Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of human telomeric DNA G-quadruplex in complex with a novel platinum(II) complex.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6xcl_A_DA1_DG2 | NAN | NANT | 0 | 1.19 |
| 02 | 6xcl_A_DG2_DG3 | NAN | NANT | 0 | 0.66 |
| 03 | 6xcl_A_DG3_DG4 | BBB | BB00 | 15 | 0.34 |
| 04 | 6xcl_A_DG4_DT5 | OPN | OP19 | 86 | 0.11 |
| 05 | 6xcl_A_DT5_DT6 | NAN | NANT | 0 | 1.25 |
| 06 | 6xcl_A_DT6_DA7 | A-B | AB04 | 86 | 0.15 |
| 07 | 6xcl_A_DA7_DG8 | NAN | NANT | 0 | 1.41 |
| 08 | 6xcl_A_DG8_DG9 | BBB | BB00 | 72 | 0.33 |
| 09 | 6xcl_A_DG9_DG10 | NAN | NANT | 0 | 0.32 |
| 10 | 6xcl_A_DG10_DT11 | OPN | OP19 | 41 | 0.24 |
| 11 | 6xcl_A_DT11_DT12 | NAN | NANT | 0 | 1.53 |
| 12 | 6xcl_A_DT12_DA13 | A-B | AB05 | 42 | 0.26 |
| 13 | 6xcl_A_DA13_DG14 | NAN | NANT | 0 | 1.45 |
| 14 | 6xcl_A_DG14_DG15 | miB | BB15 | 62 | 0.20 |
| 15 | 6xcl_A_DG15_DG16 | BBB | BB00 | 39 | 0.29 |
| 16 | 6xcl_A_DG16_DT17 | NAN | NANT | 0 | 0.29 |
| 17 | 6xcl_A_DT17_DT18 | NAN | NANT | 0 | 1.28 |
| 18 | 6xcl_A_DT18_DA19 | A-B | AB05 | 61 | 0.42 |
| 19 | 6xcl_A_DA19_DG20 | NAN | NANT | 0 | 1.44 |
| 20 | 6xcl_A_DG20_DG21 | BBB | BB00 | 71 | 0.30 |
| 21 | 6xcl_A_DG21_DG22 | BBB | BB00 | 80 | 0.29 |
| 22 | 6xcl_B_DA1_DG2 | NAN | NANT | 0 | 1.75 |
| 23 | 6xcl_B_DG2_DG3 | NAN | NANT | 0 | 0.34 |
| 24 | 6xcl_B_DG3_DG4 | BBB | BB00 | 11 | 0.36 |
| 25 | 6xcl_B_DG4_DT5 | OPN | OP19 | 86 | 0.10 |
| 26 | 6xcl_B_DT5_DT6 | NAN | NANT | 0 | 1.22 |
| 27 | 6xcl_B_DT6_DA7 | A-B | AB04 | 86 | 0.17 |
| 28 | 6xcl_B_DA7_DG8 | NAN | NANT | 0 | 1.39 |
| 29 | 6xcl_B_DG8_DG9 | BBB | BB00 | 64 | 0.32 |
| 30 | 6xcl_B_DG9_DG10 | BBB | BB00 | 12 | 0.30 |
| 31 | 6xcl_B_DG10_DT11 | OPN | OP19 | 82 | 0.21 |
| 32 | 6xcl_B_DT11_DT12 | NAN | NANT | 0 | 1.39 |
| 33 | 6xcl_B_DT12_DA13 | A-B | AB05 | 79 | 0.17 |
| 34 | 6xcl_B_DA13_DG14 | NAN | NANT | 0 | 1.53 |
| 35 | 6xcl_B_DG14_DG15 | BBB | BB00 | 27 | 0.26 |
| 36 | 6xcl_B_DG15_DG16 | BBB | BB00 | 47 | 0.27 |
| 37 | 6xcl_B_DG16_DT17 | OPN | OP19 | 74 | 0.16 |
| 38 | 6xcl_B_DT17_DT18 | NAN | NANT | 0 | 1.25 |
| 39 | 6xcl_B_DT18_DA19 | A-B | AB04 | 87 | 0.15 |
| 40 | 6xcl_B_DA19_DG20 | NAN | NANT | 0 | 1.58 |
| 41 | 6xcl_B_DG20_DG21 | BBB | BB00 | 76 | 0.27 |
| 42 | 6xcl_B_DG21_DG22 | BBB | BB00 | 79 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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