Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CSL (RBPJ) bound to Notch3 RAM and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6wqu_A_DA1_DA2 | SYN | BBS1 | 74 | 0.26 |
| 02 | 6wqu_A_DA2_DT3 | BBB | BB00 | 72 | 0.31 |
| 03 | 6wqu_A_DT3_DC4 | B12 | BB04 | 53 | 0.22 |
| 04 | 6wqu_A_DC4_DT5 | BBB | BB00 | 61 | 0.27 |
| 05 | 6wqu_A_DT5_DT6 | BBB | BB01 | 86 | 0.14 |
| 06 | 6wqu_A_DT6_DT7 | BBB | BB01 | 70 | 0.19 |
| 07 | 6wqu_A_DT7_DC8 | BBB | BB00 | 58 | 0.20 |
| 08 | 6wqu_A_DC8_DC9 | BBB | BB00 | 82 | 0.22 |
| 09 | 6wqu_A_DC9_DC10 | BBB | BB00 | 87 | 0.17 |
| 10 | 6wqu_A_DC10_DA11 | BB2 | BB07 | 52 | 0.24 |
| 11 | 6wqu_A_DA11_DC12 | BB2 | BB07 | 70 | 0.27 |
| 12 | 6wqu_A_DC12_DG13 | BBB | BB00 | 68 | 0.41 |
| 13 | 6wqu_A_DG13_DG14 | B-A | BA16 | 83 | 0.20 |
| 14 | 6wqu_A_DG14_DT15 | A-B | AB05 | 48 | 0.21 |
| 15 | 6wqu_B_DT16_DT17 | A-B | AB05 | 77 | 0.14 |
| 16 | 6wqu_B_DT17_DA18 | NAN | NANT | 0 | 0.40 |
| 17 | 6wqu_B_DA18_DC19 | A-B | AB02 | 68 | 0.35 |
| 18 | 6wqu_B_DC19_DC20 | BBB | BB00 | 18 | 0.25 |
| 19 | 6wqu_B_DC20_DG21 | BBw | BB11 | 45 | 0.31 |
| 20 | 6wqu_B_DG21_DT22 | B-A | BA05 | 70 | 0.34 |
| 21 | 6wqu_B_DT22_DG23 | BBB | BB00 | 27 | 0.34 |
| 22 | 6wqu_B_DG23_DG24 | B12 | BB04 | 82 | 0.10 |
| 23 | 6wqu_B_DG24_DG25 | BBB | BB00 | 68 | 0.21 |
| 24 | 6wqu_B_DG25_DA26 | B12 | BB04 | 76 | 0.18 |
| 25 | 6wqu_B_DA26_DA27 | BBB | BB00 | 85 | 0.13 |
| 26 | 6wqu_B_DA27_DA28 | BBB | BB00 | 71 | 0.18 |
| 27 | 6wqu_B_DA28_DG29 | BBB | BB01 | 86 | 0.15 |
| 28 | 6wqu_B_DG29_DA30 | BBB | BB00 | 67 | 0.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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