Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of STENOFOLIA Protein HD domain bound with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6wig_C_DG1_DC2 | NAN | NANT | 0 | 0.42 |
| 02 | 6wig_C_DC2_DA3 | NAN | NANT | 0 | 0.56 |
| 03 | 6wig_C_DA3_DA4 | NAN | NANT | 0 | 0.35 |
| 04 | 6wig_C_DA4_DA5 | BBB | BB00 | 84 | 0.14 |
| 05 | 6wig_C_DA5_DT6 | BBB | BB00 | 51 | 0.21 |
| 06 | 6wig_C_DT6_DT7 | BBB | BB00 | 88 | 0.20 |
| 07 | 6wig_C_DT7_DA8 | BBB | BB00 | 83 | 0.23 |
| 08 | 6wig_C_DA8_DA9 | BBw | BB02 | 77 | 0.23 |
| 09 | 6wig_C_DA9_DT10 | BBB | BB00 | 42 | 0.30 |
| 10 | 6wig_C_DT10_DG11 | BB2 | BB07 | 88 | 0.19 |
| 11 | 6wig_C_DG11_DA12 | BBB | BB00 | 82 | 0.14 |
| 12 | 6wig_C_DA12_DT13 | BBw | BB02 | 73 | 0.27 |
| 13 | 6wig_C_DT13_DT14 | BBB | BB00 | 63 | 0.22 |
| 14 | 6wig_C_DT14_DT15 | BBB | BB00 | 31 | 0.21 |
| 15 | 6wig_C_DT15_DA16 | BBw | BB02 | 43 | 0.38 |
| 16 | 6wig_C_DA16_DT17 | B-A | BA10 | 48 | 0.40 |
| 17 | 6wig_C_DT17_DT18 | NAN | NANT | 0 | 0.47 |
| 18 | 6wig_C_DT18_DC19 | A-B | AB01 | 92 | 0.12 |
| 19 | 6wig_C_DC19_DA20 | BBB | BB00 | 82 | 0.29 |
| 20 | 6wig_C_DA20_DA21 | NAN | NANT | 0 | 0.67 |
| 21 | 6wig_C_DA21_DG22 | SYN | BBS1 | 14 | 0.40 |
| 22 | 6wig_D_DC1_DT2 | BBB | BB00 | 39 | 0.25 |
| 23 | 6wig_D_DT2_DT3 | BBB | BB00 | 79 | 0.25 |
| 24 | 6wig_D_DT3_DG4 | BB2 | BB07 | 48 | 0.31 |
| 25 | 6wig_D_DG4_DA5 | BBB | BB00 | 70 | 0.16 |
| 26 | 6wig_D_DA5_DA6 | B-A | BA05 | 69 | 0.16 |
| 27 | 6wig_D_DA6_DT7 | miB | BB12 | 41 | 0.47 |
| 28 | 6wig_D_DT7_DA8 | BBw | BB16 | 74 | 0.25 |
| 29 | 6wig_D_DA8_DA9 | B12 | BB04 | 65 | 0.14 |
| 30 | 6wig_D_DA9_DA10 | BBB | BB00 | 82 | 0.15 |
| 31 | 6wig_D_DA10_DT11 | BBB | BB01 | 67 | 0.21 |
| 32 | 6wig_D_DT11_DC12 | A-B | AB03 | 89 | 0.24 |
| 33 | 6wig_D_DC12_DA13 | BBB | BB00 | 80 | 0.18 |
| 34 | 6wig_D_DA13_DT14 | BBB | BB00 | 68 | 0.28 |
| 35 | 6wig_D_DT14_DT15 | B-A | BA08 | 73 | 0.33 |
| 36 | 6wig_D_DT15_DA16 | BBB | BB01 | 45 | 0.31 |
| 37 | 6wig_D_DA16_DA17 | NAN | NANT | 0 | 0.53 |
| 38 | 6wig_D_DA17_DT18 | B-A | BA05 | 35 | 0.32 |
| 39 | 6wig_D_DT18_DT19 | A-B | AB02 | 95 | 0.26 |
| 40 | 6wig_D_DT19_DT20 | BBB | BB01 | 51 | 0.19 |
| 41 | 6wig_D_DT20_DG21 | BBB | BB00 | 15 | 0.34 |
| 42 | 6wig_D_DG21_DC22 | B-A | BA01 | 54 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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