Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6wdz_C_DT299_DA300 | NAN | NANT | 0 | 0.58 |
| 02 | 6wdz_C_DA300_DG301 | NAN | NANT | 0 | 0.76 |
| 03 | 6wdz_C_DG301_DT302 | NAN | NANT | 0 | 0.59 |
| 04 | 6wdz_C_DT302_DA303 | B-A | BA10 | 22 | 0.46 |
| 05 | 6wdz_C_DA303_DT304 | A-B | AB05 | 67 | 0.37 |
| 06 | 6wdz_C_DT304_DT305 | ZZZ | ZZ02 | 46 | 0.68 |
| 07 | 6wdz_C_DT305_DA306 | NAN | NANT | 0 | 0.73 |
| 08 | 6wdz_C_DA306_DC307 | NAN | NANT | 0 | 0.45 |
| 09 | 6wdz_C_DC307_DC308 | A-B | AB05 | 39 | 0.60 |
| 10 | 6wdz_I_DT299_DA300 | NAN | NANT | 0 | 0.98 |
| 11 | 6wdz_I_DA300_DG301 | NAN | NANT | 0 | 0.77 |
| 12 | 6wdz_I_DG301_DT302 | NAN | NANT | 0 | 0.62 |
| 13 | 6wdz_I_DT302_DA303 | NAN | NANT | 0 | 0.50 |
| 14 | 6wdz_I_DA303_DT304 | NAN | NANT | 0 | 0.44 |
| 15 | 6wdz_I_DT304_DT305 | NAN | NANT | 0 | 0.74 |
| 16 | 6wdz_I_DT305_DA306 | NAN | NANT | 0 | 0.70 |
| 17 | 6wdz_I_DA306_DC307 | NAN | NANT | 0 | 0.48 |
| 18 | 6wdz_I_DC307_DC308 | NAN | NANT | 0 | 0.59 |
| 19 | 6wdz_F_DT299_DA300 | NAN | NANT | 0 | 0.80 |
| 20 | 6wdz_F_DA300_DG301 | NAN | NANT | 0 | 0.76 |
| 21 | 6wdz_F_DG301_DT302 | NAN | NANT | 0 | 0.53 |
| 22 | 6wdz_F_DT302_DA303 | NAN | NANT | 0 | 0.48 |
| 23 | 6wdz_F_DA303_DT304 | A-B | AB05 | 77 | 0.24 |
| 24 | 6wdz_F_DT304_DT305 | NAN | NANT | 0 | 0.56 |
| 25 | 6wdz_F_DT305_DA306 | NAN | NANT | 0 | 0.73 |
| 26 | 6wdz_F_DA306_DC307 | NAN | NANT | 0 | 0.45 |
| 27 | 6wdz_F_DC307_DC308 | A-B | AB05 | 36 | 0.54 |
| 28 | 6wdz_J_DT305_DA306 | NAN | NANT | 0 | 1.56 |
| 29 | 6wdz_J_DA306_DC307 | NAN | NANT | 0 | 1.09 |
| 30 | 6wdz_J_DC307_DC308 | NAN | NANT | 0 | 1.23 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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