DNATCO v4.1: results

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM

Results of the assignment of 127 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6wc0_B_GTP1_G2	NAN	NANT	0	0.40	AA06
002	6wc0_B_G2_A3	AAA	AA03	86	0.22	AA03
003	6wc0_B_A3_U4	AAA	AA00	88	0.12	AA00
004	6wc0_B_U4_G5	AAA	AA00	90	0.14	AA00
005	6wc0_B_G5_G6	AAA	AA00	60	0.20	AA00
006	6wc0_B_G6_C7	AAA	AA00	89	0.19	AA00
007	6wc0_B_C7_A8	AAA	AA00	87	0.16	AA00
008	6wc0_B_A8_A9	AAA	AA00	94	0.14	AA00
009	6wc0_B_A9_G10	AAA	AA00	74	0.18	AA00
010	6wc0_B_G10_A11	AAA	AA00	80	0.21	AA00
011	6wc0_B_A11_U12	AAA	AA00	89	0.12	AA00
012	6wc0_B_U12_C13	AAw	AA06	91	0.33	AA06
013	6wc0_B_C13_C14	AAA	AA00	71	0.23	AA00
014	6wc0_B_C14_U15	AAA	AA00	82	0.13	AA00
015	6wc0_B_U15_G16	AAA	AA00	86	0.19	AA00
016	6wc0_B_G16_G17	AAw	AA01	89	0.21	AA01
017	6wc0_B_G17_U18	AAA	AA00	68	0.27	AA00
018	6wc0_B_U18_A19	AAA	AA00	58	0.28	AA00
019	6wc0_B_A19_U20	AAw	AA10	52	0.24	AA10
020	6wc0_B_U20_G21	AAA	AA08	63	0.27	AA08
021	6wc0_B_G21_C22	AAA	AA08	85	0.12	AA08
022	6wc0_B_C22_U23	AAA	AA00	89	0.13	AA00
023	6wc0_B_U23_G24	AAA	AA00	97	0.09	AA00
024	6wc0_B_G24_G25	AAA	AA00	89	0.18	AA00
025	6wc0_B_G25_G26	AAw	AA01	72	0.28	AA01
026	6wc0_B_G26_G27	NAN	NANT	0	0.62	AA05
027	6wc0_B_G27_A28	NAN	NANT	0	0.92	BA16
028	6wc0_B_A28_G29	AAA	AA08	91	0.25	AA08
029	6wc0_B_G29_C30	AAA	AA00	77	0.19	AA00
030	6wc0_B_C30_C31	AAA	AA00	70	0.21	AA00
031	6wc0_B_C31_U32	AAw	AA01	45	0.36	AA01
032	6wc0_B_U32_G33	AAw	AA06	22	0.73	AA06
033	6wc0_B_G33_A34	OPN	OP03	40	0.30	OP03
034	6wc0_B_A34_A35	NAN	NANT	0	0.86	AA08
035	6wc0_B_A35_A36	NAN	NANT	0	0.57	ZZ01
036	6wc0_B_A36_A37	NAN	NANT	0	1.14	AB02
037	6wc0_B_A37_G38	B-A	BA09	62	0.24	BA09
038	6wc0_B_G38_G39	NAN	NANT	0	0.25	AB05
039	6wc0_B_G39_C40	B-A	BA01	14	0.40	BA01
040	6wc0_B_C40_U41	AAA	AA00	84	0.21	AA00
041	6wc0_B_U41_A42	AAw	AA10	86	0.21	AA10
042	6wc0_B_A42_C43	AAA	AA00	82	0.16	AA00
043	6wc0_B_C43_C44	AAA	AA00	38	0.34	AA00
044	6wc0_B_C44_U45	AAA	AA00	91	0.24	AA00
045	6wc0_B_U45_A46	AAA	AA00	92	0.20	AA00
046	6wc0_B_A46_G47	AAA	AA00	97	0.14	AA00
047	6wc0_B_G47_C48	AAA	AA00	91	0.17	AA00
048	6wc0_B_C48_A49	NAN	NANT	0	1.75	OP08
049	6wc0_B_A49_A50	NAN	NANT	0	0.42	AAS1
050	6wc0_B_A50_G51	NAN	NANT	0	0.90	AA10
051	6wc0_B_G51_A52	AAA	AA00	75	0.20	AA00
052	6wc0_B_A52_C53	NAN	NANT	0	0.38	AA10
053	6wc0_B_C53_C54	NAN	NANT	0	0.90	BA09
054	6wc0_B_C54_C55	AAA	AA00	57	0.37	AA00
055	6wc0_B_C55_C56	AAA	AA08	83	0.19	AA08
056	6wc0_B_C56_U57	NAN	NANT	0	0.68	AA05
057	6wc0_B_U57_U58	NAN	NANT	0	1.67	OP29
058	6wc0_B_U58_C59	NAN	NANT	0	1.93	OP16
059	6wc0_B_C59_G60	NAN	NANT	0	1.59	AB2S
060	6wc0_B_G60_U61	NAN	NANT	0	0.69	IC04
061	6wc0_B_U61_G62	NAN	NANT	0	1.35	OP27
062	6wc0_B_G62_G63	AAw	AA01	33	0.47	AA01
063	6wc0_B_G63_G64	SYN	AB2S	11	0.45	AB2S
064	6wc0_B_G64_G65	NAN	NANT	0	1.58	OP24
065	6wc0_B_G65_U66	AAw	AA10	25	0.36	AA10
066	6wc0_B_U66_C67	AAw	AA10	37	0.46	AA10
067	6wc0_B_C67_G68	AAA	AA08	78	0.29	AA08
068	6wc0_B_G68_C69	NAN	NANT	0	0.97	OP07
069	6wc0_B_C69_A70	OPN	OP11	73	0.38	OP11
070	6wc0_B_A70_U71	AAA	AA00	65	0.20	AA00
071	6wc0_B_U71_U72	NAN	NANT	0	1.60	OP01
072	6wc0_B_U72_C73	NAN	NANT	0	1.09	IC03
073	6wc0_B_C73_U74	NAN	NANT	0	0.49	OP06
074	6wc0_B_U74_U75	AAA	AA00	41	0.44	AA00
075	6wc0_B_U75_C76	AAA	AA00	73	0.35	AA00
076	6wc0_B_C76_A77	AAA	AA08	72	0.31	AA08
077	6wc0_B_A77_C78	A-B	AB05	71	0.20	AB05
078	6wc0_B_C78_C79	NAN	NANT	0	0.61	BA10
079	6wc0_B_C79_C80	NAN	NANT	0	0.50	AA06
080	6wc0_B_C80_C81	NAN	NANT	0	0.51	AA01
081	6wc0_B_C81_C82	AAA	AA08	64	0.30	AA08
082	6wc0_B_A86_G87	NAN	NANT	0	0.73	BA16
083	6wc0_B_G87_G88	AAw	AA01	71	0.26	AA01
084	6wc0_B_G88_G89	AAA	AA08	77	0.24	AA08
085	6wc0_B_G89_G90	AAw	AA01	56	0.18	AA01
086	6wc0_B_G90_G91	AAA	AA08	82	0.21	AA08
087	6wc0_B_G91_U92	AAA	AA00	90	0.18	AA00
088	6wc0_B_U92_U93	NAN	NANT	0	0.37	OP28
089	6wc0_B_U93_C94	NAN	NANT	0	1.31	IC03
090	6wc0_C_DC-10_DG-9	NAN	NANT	0	0.42	BB04
091	6wc0_C_DG-9_DC-8	BBB	BB00	70	0.21	BB00
092	6wc0_C_DC-8_DC-7	BBw	BB02	18	0.45	BB02
093	6wc0_C_DC-7_DA-6	BBB	BB00	33	0.49	BB00
094	6wc0_C_DA-6_DG-5	BBB	BB00	49	0.39	BB00
095	6wc0_C_DG-5_DA-4	BBB	BB00	76	0.16	BB00
096	6wc0_C_DA-4_DT-3	BBB	BB00	85	0.16	BB00
097	6wc0_C_DT-3_DA-2	B12	BB04	80	0.23	BB04
098	6wc0_C_DA-2_DT-1	NAN	NANT	0	0.47	BB08
099	6wc0_C_DT-1_DA1	NAN	NANT	0	0.46	OP17
100	6wc0_C_DA1_DT2	BBB	BB00	12	0.48	BB00
101	6wc0_C_DT2_DA3	B-A	BA05	31	0.28	BA05
102	6wc0_C_DA3_DC4	AAw	AA01	58	0.32	AA01
103	6wc0_C_DC4_DC5	AAA	AA00	60	0.26	AA00
104	6wc0_C_DC5_DA6	A-B	AB05	50	0.37	AB05
105	6wc0_C_DA6_DG7	B-A	BA05	72	0.30	BA05
106	6wc0_C_DG7_DG8	NAN	NANT	0	0.69	BA10
107	6wc0_C_DG8_DA9	NAN	NANT	0	0.50	AA04
108	6wc0_C_DA9_DT10	AAA	AA00	83	0.31	AA00
109	6wc0_C_DT10_DC11	NAN	NANT	0	0.68	BB2S
110	6wc0_C_DC11_DT12	SYN	AAS1	68	0.45	AAS1
111	6wc0_C_DT12_DT13	AAw	AA01	38	0.31	AA01
112	6wc0_C_DT13_DG14	AAA	AA08	77	0.24	AA08
113	6wc0_C_DG14_DC15	AAA	AA00	93	0.20	AA00
114	6wc0_C_DC15_DC16	AAA	AA00	91	0.21	AA00
115	6wc0_C_DC16_DA17	AAA	AA00	68	0.28	AA00
116	6wc0_C_DA17_DT18	A-B	AB01	43	0.26	AB01
117	6wc0_C_DT18_DC19	B-A	BA10	23	0.47	BA10
118	6wc0_C_DC19_DC20	NAN	NANT	0	0.41	AA10
119	6wc0_D_DA1_DT2	BBB	BB00	61	0.28	BB00
120	6wc0_D_DT2_DA3	BBB	BB00	69	0.37	BB00
121	6wc0_D_DA3_DT4	B-A	BA10	76	0.31	BA10
122	6wc0_D_DT4_DC5	AAA	AA00	77	0.27	AA00
123	6wc0_D_DC5_DT6	NAN	NANT	0	0.54	AB04
124	6wc0_D_DT6_DG7	BBB	BB01	33	0.24	BB01
125	6wc0_D_DG7_DG8	B12	BB04	12	0.25	BB04
126	6wc0_D_DG8_DC9	NAN	NANT	0	0.46	BB02
127	6wc0_D_DC9_DG10	NAN	NANT	0	0.58	BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 127 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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