DNATCO v4.1: results

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Results of the assignment of 127 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6wbr_B_GTP1_G2	AAw	AA01	17	0.47	AA01
002	6wbr_B_G2_A3	AAA	AA08	70	0.19	AA08
003	6wbr_B_A3_U4	AAA	AA00	89	0.12	AA00
004	6wbr_B_U4_G5	AAA	AA00	92	0.15	AA00
005	6wbr_B_G5_G6	AAA	AA00	47	0.27	AA00
006	6wbr_B_G6_C7	AAA	AA00	85	0.23	AA00
007	6wbr_B_C7_A8	AAA	AA00	93	0.17	AA00
008	6wbr_B_A8_A9	AAA	AA00	91	0.14	AA00
009	6wbr_B_A9_G10	AAA	AA00	64	0.22	AA00
010	6wbr_B_G10_A11	AAA	AA00	84	0.16	AA00
011	6wbr_B_A11_U12	AAA	AA00	91	0.11	AA00
012	6wbr_B_U12_C13	AAw	AA06	88	0.27	AA06
013	6wbr_B_C13_C14	AAA	AA00	78	0.24	AA00
014	6wbr_B_C14_U15	AAA	AA00	85	0.16	AA00
015	6wbr_B_U15_G16	AAA	AA00	80	0.21	AA00
016	6wbr_B_G16_G17	AAw	AA01	87	0.11	AA01
017	6wbr_B_G17_U18	NAN	NANT	0	0.36	AA03
018	6wbr_B_U18_A19	AAw	AA10	43	0.28	AA10
019	6wbr_B_A19_U20	NAN	NANT	0	0.38	AA10
020	6wbr_B_U20_G21	AAA	AA08	18	0.47	AA08
021	6wbr_B_G21_C22	AAA	AA00	82	0.14	AA00
022	6wbr_B_C22_U23	AAA	AA00	89	0.16	AA00
023	6wbr_B_U23_G24	AAA	AA00	90	0.11	AA00
024	6wbr_B_G24_G25	AAA	AA00	93	0.15	AA00
025	6wbr_B_G25_G26	AAw	AA01	45	0.23	AA01
026	6wbr_B_G26_G27	NAN	NANT	0	0.77	BB03
027	6wbr_B_G27_A28	NAN	NANT	0	1.01	BA16
028	6wbr_B_A28_G29	AAA	AA08	63	0.25	AA08
029	6wbr_B_G29_C30	AAA	AA00	79	0.25	AA00
030	6wbr_B_C30_C31	AAA	AA00	61	0.25	AA00
031	6wbr_B_C31_U32	AAw	AA01	65	0.23	AA01
032	6wbr_B_U32_G33	AAw	AA06	17	0.69	AA06
033	6wbr_B_G33_A34	OPN	OP03	22	0.52	OP03
034	6wbr_B_A34_A35	NAN	NANT	0	0.85	AA08
035	6wbr_B_A35_A36	NAN	NANT	0	1.04	AB04
036	6wbr_B_A36_A37	NAN	NANT	0	0.99	AB02
037	6wbr_B_A37_G38	NAN	NANT	0	0.47	BA09
038	6wbr_B_G38_G39	NAN	NANT	0	0.64	AA10
039	6wbr_B_G39_C40	NAN	NANT	0	0.50	AA01
040	6wbr_B_C40_U41	AAA	AA08	70	0.26	AA08
041	6wbr_B_U41_A42	AAw	AA01	40	0.24	AA01
042	6wbr_B_A42_C43	AAA	AA00	69	0.26	AA00
043	6wbr_B_C43_C44	AAA	AA00	70	0.24	AA00
044	6wbr_B_C44_U45	AAA	AA00	90	0.20	AA00
045	6wbr_B_U45_A46	AAA	AA04	71	0.32	AA04
046	6wbr_B_A46_G47	AAA	AA00	86	0.13	AA00
047	6wbr_B_G47_C48	AAA	AA00	92	0.15	AA00
048	6wbr_B_C48_A49	NAN	NANT	0	1.68	OP08
049	6wbr_B_A49_A50	NAN	NANT	0	0.56	AAS1
050	6wbr_B_A50_G51	NAN	NANT	0	0.85	AA10
051	6wbr_B_G51_A52	AAA	AA04	86	0.25	AA04
052	6wbr_B_A52_C53	NAN	NANT	0	0.52	AA10
053	6wbr_B_C53_C54	NAN	NANT	0	0.44	AA10
054	6wbr_B_C54_C55	AAA	AA00	40	0.42	AA00
055	6wbr_B_C55_C56	AAA	AA00	28	0.18	AA00
056	6wbr_B_C56_U57	NAN	NANT	0	0.73	AA05
057	6wbr_B_U57_U58	NAN	NANT	0	1.56	OP29
058	6wbr_B_U58_C59	NAN	NANT	0	1.92	OP16
059	6wbr_B_C59_G60	NAN	NANT	0	0.83	AA13
060	6wbr_B_G60_U61	NAN	NANT	0	0.77	IC04
061	6wbr_B_U61_G62	NAN	NANT	0	1.09	OP27
062	6wbr_B_G62_G63	AAw	AA06	15	0.36	AA06
063	6wbr_B_G63_G64	AAw	AA01	17	0.49	AA01
064	6wbr_B_G64_G65	NAN	NANT	0	0.39	AA10
065	6wbr_B_G65_U66	NAN	NANT	0	0.52	AA10
066	6wbr_B_U66_C67	AAw	AA01	12	0.42	AA01
067	6wbr_B_C67_G68	NAN	NANT	0	0.44	AA03
068	6wbr_B_G68_C69	NAN	NANT	0	0.87	IC02
069	6wbr_B_C69_A70	NAN	NANT	0	0.50	OP11
070	6wbr_B_A70_U71	AAA	AA00	60	0.19	AA00
071	6wbr_B_U71_U72	NAN	NANT	0	1.57	OP01
072	6wbr_B_U72_C73	NAN	NANT	0	1.07	IC03
073	6wbr_B_C73_U74	NAN	NANT	0	0.45	OP06
074	6wbr_B_U74_U75	AAA	AA00	20	0.48	AA00
075	6wbr_B_U75_C76	AAA	AA00	53	0.27	AA00
076	6wbr_B_C76_A77	NAN	NANT	0	0.44	AA03
077	6wbr_B_A77_C78	AAw	AA01	16	0.37	AA01
078	6wbr_B_C78_C79	NAN	NANT	0	0.39	AA03
079	6wbr_B_C79_C80	NAN	NANT	0	0.58	AA06
080	6wbr_B_C80_C81	NAN	NANT	0	0.68	AA01
081	6wbr_B_C81_C82	NAN	NANT	0	0.77	AA11
082	6wbr_B_A86_G87	NAN	NANT	0	0.71	BA16
083	6wbr_B_G87_G88	AAw	AA01	42	0.42	AA01
084	6wbr_B_G88_G89	AAA	AA03	62	0.29	AA03
085	6wbr_B_G89_G90	AAw	AA01	76	0.25	AA01
086	6wbr_B_G90_G91	AAA	AA00	56	0.26	AA00
087	6wbr_B_G91_U92	AAA	AA00	93	0.23	AA00
088	6wbr_B_U92_U93	NAN	NANT	0	0.37	OP28
089	6wbr_B_U93_C94	NAN	NANT	0	1.30	IC03
090	6wbr_C_DC-10_DG-9	NAN	NANT	0	0.61	BB02
091	6wbr_C_DG-9_DC-8	NAN	NANT	0	0.35	BA05
092	6wbr_C_DC-8_DC-7	BBw	BB02	13	0.42	BB02
093	6wbr_C_DC-7_DA-6	BBB	BB00	34	0.48	BB00
094	6wbr_C_DA-6_DG-5	BBB	BB00	44	0.44	BB00
095	6wbr_C_DG-5_DG-4	BBB	BB00	72	0.19	BB00
096	6wbr_C_DG-4_DT-3	BBB	BB00	84	0.20	BB00
097	6wbr_C_DT-3_DA-2	B12	BB04	76	0.28	BB04
098	6wbr_C_DA-2_DT-1	NAN	NANT	0	0.54	BB05
099	6wbr_C_DT-1_DA1	NAN	NANT	0	0.46	OP17
100	6wbr_C_DA1_DT2	BBB	BB00	15	0.42	BB00
101	6wbr_C_DT2_DA3	B-A	BA05	29	0.30	BA05
102	6wbr_C_DA3_DC4	AAw	AA01	51	0.36	AA01
103	6wbr_C_DC4_DC5	AAA	AA00	56	0.29	AA00
104	6wbr_C_DC5_DA6	A-B	AB03	22	0.53	AB03
105	6wbr_C_DA6_DG7	BBB	BB00	43	0.21	BB00
106	6wbr_C_DG7_DG8	NAN	NANT	0	0.33	BA13
107	6wbr_C_DG8_DA9	NAN	NANT	0	0.58	AA06
108	6wbr_C_DA9_DT10	AAA	AA00	83	0.34	AA00
109	6wbr_C_DT10_DC11	NAN	NANT	0	0.70	BB2S
110	6wbr_C_DC11_DT12	SYN	AAS1	47	0.48	AAS1
111	6wbr_C_DT12_DT13	AAw	AA01	37	0.33	AA01
112	6wbr_C_DT13_DG14	AAA	AA08	79	0.27	AA08
113	6wbr_C_DG14_DC15	AAA	AA00	93	0.26	AA00
114	6wbr_C_DC15_DC16	AAA	AA00	94	0.24	AA00
115	6wbr_C_DC16_DA17	AAA	AA00	48	0.32	AA00
116	6wbr_C_DA17_DT18	A-B	AB01	50	0.28	AB01
117	6wbr_C_DT18_DC19	B-A	BA10	20	0.47	BA10
118	6wbr_C_DC19_DC20	NAN	NANT	0	0.40	AA10
119	6wbr_D_DA1_DT2	BBB	BB00	44	0.23	BB00
120	6wbr_D_DT2_DA3	BBB	BB00	25	0.27	BB00
121	6wbr_D_DA3_DC4	B-A	BA13	74	0.17	BA13
122	6wbr_D_DC4_DC5	AAA	AA00	44	0.22	AA00
123	6wbr_D_DC5_DT6	NAN	NANT	0	0.46	AB04
124	6wbr_D_DT6_DG7	BBB	BB01	33	0.35	BB01
125	6wbr_D_DG7_DG8	NAN	NANT	0	0.59	BB15
126	6wbr_D_DG8_DC9	NAN	NANT	0	0.44	BB02
127	6wbr_D_DC9_DG10	B-A	BA08	80	0.20	BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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B

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Z

N

Results of the assignment of 127 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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