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Conformers: ABBIImiBZICOPNSYNN
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Tel26 Parallel Four-quartet G-quadruplex with K+

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016w9p_A_DG1_DT2NANNANT00.98 IC02
026w9p_A_DT2_DT3BBwBB16190.63 BB16
036w9p_A_DT3_DG4NANNANT00.81 OP28
046w9p_A_DG4_DG5BBBBB00360.34 BB00
056w9p_A_DG5_DG6BBBBB00570.27 BB00
066w9p_A_DG6_DG7BBBBB00600.23 BB00
076w9p_A_DG7_DT8NANNANT00.83 OP21
086w9p_A_DT8_DT9NANNANT00.43 OP20
096w9p_A_DT9_DG10NANNANT01.45 BB15
106w9p_A_DG10_DG11NANNANT00.65 BB03
116w9p_A_DG11_DG12BBBBB01480.25 BB01
126w9p_A_DG12_DG13BBBBB00250.26 BB00
136w9p_A_DG13_DT14OPNOP21160.51 OP21
146w9p_A_DT14_DT15NANNANT00.56 OP20
156w9p_A_DT15_DG16NANNANT01.51 BB15
166w9p_A_DG16_DG17NANNANT00.77 BB13
176w9p_A_DG17_DG18BBBBB00490.35 BB00
186w9p_A_DG18_DG19BBwBB02560.31 BB02
196w9p_A_DG19_DT20NANNANT00.76 OP21
206w9p_A_DT20_DT21NANNANT01.73 IC03
216w9p_A_DT21_DG22NANNANT01.62 BB20
226w9p_A_DG22_DG23NANNANT00.64 BB03
236w9p_A_DG23_DG24BBBBB00560.30 BB00
246w9p_A_DG24_DG25BBBBB00840.21 BB00
256w9p_A_DG25_DT26NANNANT00.38 BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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