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Conformers: ABBIImiBZICOPNSYNN
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Abortive ternary complex crystal structure of DNA polymerase Beta with 8OG-dC base pair at the primer terminus and flipped out dA

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016w2m_T_DC1_DC2BBwBB16460.31 BB16
026w2m_T_DC2_DG3BB2BB07620.14 BB07
036w2m_T_DG3_DA4BBBBB00400.20 BB00
046w2m_T_DA4_DC5BBBBB00570.25 BB00
056w2m_T_DC5_DG6NANNANT01.37 OP21
066w2m_T_DG6_8OG7B-ABA05200.38 BA05
076w2m_T_8OG7_DC8A-BAB01510.42 AB01
086w2m_T_DC8_DG9B12BB04250.44 BB04
096w2m_T_DG9_DC10BBBBB00810.17 BB00
106w2m_T_DC10_DA11BBBBB00890.21 BB00
116w2m_T_DA11_DT12BBBBB01630.22 BB01
126w2m_T_DT12_DC13BBBBB00280.26 BB00
136w2m_T_DC13_DA14BBBBB00480.39 BB00
146w2m_T_DA14_DG15BBBBB00930.14 BB00
156w2m_T_DG15_DC16BBBBB01390.24 BB01
166w2m_P_DG1_DC2NANNANT00.39 AB04
176w2m_P_DC2_DT3BBBBB00200.25 BB00
186w2m_P_DT3_DG4B12BB04360.36 BB04
196w2m_P_DG4_DA5B12BB04900.14 BB04
206w2m_P_DA5_DT6BBBBB01870.14 BB01
216w2m_P_DT6_DG7BBBBB00670.23 BB00
226w2m_P_DG7_DC8B-ABA05850.09 BA05
236w2m_P_DC8_DG9BBBBB01650.20 BB01
246w2m_P_DG9_DA10NANNANT01.55 OP17
256w2m_P_DA10_DC11NANNANT00.77 OP12
266w2m_D_DG1_DT2BBBBB01750.23 BB01
276w2m_D_DT2_DC3BBBBB01830.18 BB01
286w2m_D_DC3_DG4BBBBB00220.34 BB00
296w2m_D_DG4_DG5BBBBB00710.27 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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