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Conformers: ABBIImiBZICOPNSYNN
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Diabody bound to a Reverse Transcriptase Aptamer Complex

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vug_E_DA0_DC1AAAAA00810.24 AA00
026vug_E_DC1_OMC2AAAAA00870.16 AA00
036vug_E_OMC2_DC3AAAAA00720.23 AA00
046vug_E_DC3_OMC4AAAAA00810.18 AA00
056vug_E_OMC4_DC5AAAAA00880.16 AA00
066vug_E_DC5_DC6A-BAB05810.25 AB05
076vug_E_DC6_DC7BBBBB00570.37 BB00
086vug_E_DC7_DT8BBBBB00810.17 BB00
096vug_E_DT8_DT9BBBBB00920.11 BB00
106vug_E_DT9_DC10BBBBB00840.18 BB00
116vug_E_DC10_DG11miBBB10570.33 BB10
126vug_E_DG11_DG12B12BB04750.14 BB04
136vug_E_DG12_DT13BBBBB00800.23 BB00
146vug_E_DT13_DG14B12BB04650.22 BB04
156vug_E_DG14_DC15miBBB13290.39 BB13
166vug_E_DC15_DT16NANNANT00.83 OP04
176vug_E_DT16_DT17NANNANT00.95 IC03
186vug_E_DT17_DT18NANNANT00.63 BB07
196vug_E_DT18_DG19NANNANT00.64 OP22
206vug_E_DG19_DC20B-ABA05890.17 BA05
216vug_E_DC20_DA21B-ABA05430.41 BA05
226vug_E_DA21_DC22BBBBB01490.26 BB01
236vug_E_DC22_DC23BBBBB00370.18 BB00
246vug_E_DC23_DG24B12BB04940.21 BB04
256vug_E_DG24_DA25B12BB04870.17 BB04
266vug_E_DA25_DA26BBBBB00930.19 BB00
276vug_E_DA26_DG27miBBB10510.25 BB10
286vug_E_DG27_DG28NANNANT00.35 BA08
296vug_E_DG28_DG29AAAAA00890.13 AA00
306vug_E_DG29_DG30AAAAA00910.13 AA00
316vug_E_DG30_DG31AAAAA00880.19 AA00
326vug_E_DG31_DG32AAAAA00920.18 AA00
336vug_E_DG32_DG33AAAAA00790.26 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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