Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of human KLF4 zinc finger DNA binding domain in complex with NANOG DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6vtx_B_DA1_DG2 | A-B | AB05 | 56 | 0.18 |
| 02 | 6vtx_B_DG2_DG3 | BBB | BB00 | 73 | 0.20 |
| 03 | 6vtx_B_DG3_DG4 | B-A | BA10 | 48 | 0.31 |
| 04 | 6vtx_B_DG4_DG5 | A-B | AB05 | 89 | 0.18 |
| 05 | 6vtx_B_DG5_DG6 | BBw | BB02 | 43 | 0.35 |
| 06 | 6vtx_B_DG6_DT7 | BBB | BB00 | 25 | 0.30 |
| 07 | 6vtx_B_DT7_DG8 | BBB | BB00 | 40 | 0.30 |
| 08 | 6vtx_B_DG8_DT9 | BBB | BB01 | 88 | 0.13 |
| 09 | 6vtx_B_DT9_DG10 | BBB | BB00 | 70 | 0.31 |
| 10 | 6vtx_B_DG10_DC11 | BBB | BB00 | 83 | 0.18 |
| 11 | 6vtx_B_DC11_DC12 | BBB | BB00 | 77 | 0.30 |
| 12 | 6vtx_C_DG1_DG2 | A-B | AB05 | 35 | 0.13 |
| 13 | 6vtx_C_DG2_DC3 | miB | BB15 | 39 | 0.27 |
| 14 | 6vtx_C_DC3_DA4 | BBB | BB00 | 89 | 0.15 |
| 15 | 6vtx_C_DA4_DC5 | B12 | BB04 | 49 | 0.16 |
| 16 | 6vtx_C_DC5_DA6 | BBB | BB01 | 25 | 0.29 |
| 17 | 6vtx_C_DA6_DC7 | BBB | BB01 | 37 | 0.27 |
| 18 | 6vtx_C_DC7_DC8 | B-A | BA05 | 51 | 0.36 |
| 19 | 6vtx_C_DC8_DC9 | BBB | BB01 | 48 | 0.31 |
| 20 | 6vtx_C_DC9_DC10 | B-A | BA05 | 31 | 0.34 |
| 21 | 6vtx_C_DC10_DC11 | NAN | NANT | 0 | 0.51 |
| 22 | 6vtx_C_DC11_DT12 | NAN | NANT | 0 | 0.65 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| B | ||||
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