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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vkp_P_DG0_DG1NANNANT00.49 AB02
026vkp_P_DG1_DG2NANNANT00.40 BB00
036vkp_P_DG2_DG3BBBBB00360.27 BB00
046vkp_P_DG3_DG4BBBBB00160.32 BB00
056vkp_P_DG4_DA5AAAAA02120.49 AA02
066vkp_P_DA5_DA6NANNANT00.44 AA02
076vkp_P_DA6_DA7A-BAB03790.32 AB03
086vkp_P_DA7_DG8BBBBB01190.29 BB01
096vkp_P_DG8_DA9miBBB15360.35 BB15
106vkp_P_DA9_DT10BBwBB02450.24 BB02
116vkp_P_DT10_DT11BBBBB00500.21 BB00
126vkp_P_DT11_DC12BBBBB00590.28 BB00
136vkp_P_DC12_DG13NANNANT00.52 ZZ2S
146vkp_T_DT2_DC3NANNANT02.17 OP09
156vkp_T_DC3_DA4NANNANT00.79 BA01
166vkp_T_DA4_DT5NANNANT00.70 OP28
176vkp_T_DG7_DA8B-ABA05300.29 BA05
186vkp_T_DA8_DA9BBBBB01670.28 BB01
196vkp_T_DA9_DT10BBBBB01790.18 BB01
206vkp_T_DT10_DC11BBBBB01290.21 BB01
216vkp_T_DC11_DT12A-BAB03260.49 AB03
226vkp_T_DT12_DT13BBBBB00550.13 BB00
236vkp_T_DT13_DT14B-ABA05570.24 BA05
246vkp_T_DT14_DC15B-ABA05640.27 BA05
256vkp_T_DC15_DC16NANNANT00.56 AA00
266vkp_T_DC16_DC17NANNANT00.47 AB03
276vkp_T_DC17_DC18B-ABA09620.41 BA09
286vkp_T_DC18_DC19NANNANT00.50 AB04
296vkp_B_DG0_DG1NANNANT00.31 AB02
306vkp_B_DG1_DG2B12BB04160.33 BB04
316vkp_B_DG2_DG3B-ABA13170.41 BA13
326vkp_B_DG3_DG4A-BAB0190.48 AB01
336vkp_B_DG4_DA5B-ABA08190.48 BA08
346vkp_B_DA5_DA6NANNANT00.44 AA02
356vkp_B_DA6_DA7BBBBB00400.38 BB00
366vkp_B_DA7_DG8BBBBB00460.27 BB00
376vkp_B_DG8_DA9miBBB15460.31 BB15
386vkp_B_DA9_DT10BBBBB00350.24 BB00
396vkp_B_DT10_DT11BBBBB01860.16 BB01
406vkp_B_DT11_DC12BBBBB00480.30 BB00
416vkp_B_DC12_DG13NANNANT00.52 ZZ2S
426vkp_C_DT2_DC3NANNANT01.13 OP16
436vkp_C_DC3_DA4NANNANT00.46 BB16
446vkp_C_DA4_DT5NANNANT00.72 OP28
456vkp_C_DG7_DA8BBBBB01400.32 BB01
466vkp_C_DA8_DA9BBBBB00120.30 BB00
476vkp_C_DA9_DT10BBBBB00680.18 BB00
486vkp_C_DT10_DC11BBBBB00760.16 BB00
496vkp_C_DC11_DT12miBBB15590.31 BB15
506vkp_C_DT12_DT13BBBBB00450.21 BB00
516vkp_C_DT13_DT14B-ABA01120.23 BA01
526vkp_C_DT14_DC15B-ABA05560.28 BA05
536vkp_C_DC15_DC16B-ABA05340.27 BA05
546vkp_C_DC16_DC17AAAAA02270.45 AA02
556vkp_C_DC17_DC18NANNANT00.62 AA10
566vkp_C_DC18_DC19NANNANT00.58 AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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