Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the DNA binding domain of human transcription factor FLI1 in complex with 16-mer DNA CAGAGGATGTGGCTTC

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vg2_B_DC1_DA2NANNANT00.57 BB13
026vg2_B_DA2_DG3NANNANT00.41 BB16
036vg2_B_DG3_DA4B-ABA05230.24 BA05
046vg2_B_DA4_DG5A-BAB03720.24 AB03
056vg2_B_DG5_DG6B12BB04840.21 BB04
066vg2_B_DG6_DA7BBBBB00820.16 BB00
076vg2_B_DA7_DT8B-ABA05640.19 BA05
086vg2_B_DT8_DG9BBBBB01300.26 BB01
096vg2_B_DG9_DT10BBBBB00800.26 BB00
106vg2_B_DT10_DG11B12BB04140.41 BB04
116vg2_B_DG11_DG12BBBBB00690.32 BB00
126vg2_B_DG12_DC13BBBBB00450.33 BB00
136vg2_B_DC13_DT14BBBBB00850.20 BB00
146vg2_B_DT14_DT15BB2BB07200.57 BB07
156vg2_B_DT15_DC16miBBB10620.28 BB10
166vg2_C_DG9_DA10NANNANT00.54 BB10
176vg2_C_DA10_DA11B12BB04340.21 BB04
186vg2_C_DA11_DG12B-ABA01240.41 BA01
196vg2_C_DG12_DC13A-BAB01660.34 AB01
206vg2_C_DC13_DC14NANNANT00.43 BB17
216vg2_C_DC14_DA15B12BB04400.37 BB04
226vg2_C_DA15_DC16B-ABA09680.40 BA09
236vg2_C_DC16_DA17NANNANT00.35 AB04
246vg2_C_DA17_DT18BBBBB01740.23 BB01
256vg2_C_DT18_DC19BBBBB01480.25 BB01
266vg2_C_DC19_DC20BBBBB00300.27 BB00
276vg2_C_DC20_DT21B12BB04700.30 BB04
286vg2_C_DT21_DC22B-ABA09450.30 BA09
296vg2_C_DC22_DT23AAAAA00170.54 AA00
306vg2_C_DT23_DG24NANNANT00.37 AA04
316vg2_E_DC1_DA2NANNANT00.47 BB13
326vg2_E_DA2_DG3NANNANT00.77 AA04
336vg2_E_DG3_DA4BBBBB01390.23 BB01
346vg2_E_DA4_DG5BBBBB00250.25 BB00
356vg2_E_DG5_DG6B12BB04840.15 BB04
366vg2_E_DG6_DA7BBBBB00670.25 BB00
376vg2_E_DA7_DT8BBBBB00880.16 BB00
386vg2_E_DT8_DG9NANNANT00.45 AB03
396vg2_E_DG9_DT10NANNANT00.54 BB00
406vg2_E_DT10_DG11BBBBB00850.20 BB00
416vg2_E_DG11_DG12B12BB04710.27 BB04
426vg2_E_DG12_DC13BBBBB00480.40 BB00
436vg2_E_DC13_DT14BBBBB00730.22 BB00
446vg2_E_DT14_DT15miBBB10630.34 BB10
456vg2_E_DT15_DC16miBBB10740.24 BB10
466vg2_F_DG9_DA10NANNANT00.58 BB07
476vg2_F_DA10_DA11B12BB04480.26 BB04
486vg2_F_DA11_DG12BBBBB00810.28 BB00
496vg2_F_DG12_DC13BB2BB07550.38 BB07
506vg2_F_DC13_DC14BBBBB00220.32 BB00
516vg2_F_DC14_DA15B12BB04620.26 BB04
526vg2_F_DA15_DC16B-ABA09730.34 BA09
536vg2_F_DC16_DA17NANNANT00.36 AB04
546vg2_F_DA17_DT18BBBBB01430.27 BB01
556vg2_F_DT18_DC19BBBBB01280.28 BB01
566vg2_F_DC19_DC20BBBBB01530.21 BB01
576vg2_F_DC20_DT21B12BB04720.23 BB04
586vg2_F_DT21_DC22B-ABA09560.27 BA09
596vg2_F_DC22_DT23NANNANT00.40 AA08
606vg2_F_DT23_DG24BBwBB16500.65 BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N