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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA Polymerase Mu, 8-oxorGTP:Ct Ground State Ternary Complex, 50 mM Mn2+ (15 min)

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vfa_T_DC1_DG2A-BAB01150.29 AB01
026vfa_T_DG2_DG3BBBBB00860.23 BB00
036vfa_T_DG3_DC4BBBBB00720.26 BB00
046vfa_T_DC4_DC5NANNANT01.19 OP21
056vfa_T_DC5_DT6B-ABA05670.20 BA05
066vfa_T_DT6_DA7A-BAB01650.26 AB01
076vfa_T_DA7_DC8BBBBB00690.35 BB00
086vfa_T_DC8_DG9BBBBB00340.40 BB00
096vfa_P_DC1_DG2AAAAA00820.25 AA00
106vfa_P_DG2_DT3AAAAA00910.15 AA00
116vfa_P_DT3_DA4NANNANT00.30 ZZ01
126vfa_D_DG1_DC2B-ABA01110.27 BA01
136vfa_D_DC2_DC3A-BAB01260.40 AB01
146vfa_D_DC3_DG4BBBBB00600.42 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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