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Conformers: ABBIImiBZICOPNSYNN
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DNA Polymerase Mu, 8-oxorGTP:Ct Pre-Catalytic Ternary Complex, 20 mM Ca2+ (120 min)

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vf8_T_DC.A1_DG.A2A-BAB05490.29 AB05
026vf8_T_DC.B1_DG.B2BBBBB00410.44 BB00
036vf8_T_DG.A2_DG3BBBBB00590.28 BB00
046vf8_T_DG.B2_DG3BBBBB00780.34 BB00
056vf8_T_DG3_DC4BBBBB00580.26 BB00
066vf8_T_DC4_DC5NANNANT01.18 OP21
076vf8_T_DC5_DT6B-ABA05700.18 BA05
086vf8_T_DT6_DA7A-BAB01780.27 AB01
096vf8_T_DA7_DC8BB2BB07710.26 BB07
106vf8_T_DC8_DG9BBBBB00240.42 BB00
116vf8_P_DC1_DG2AAAAA00890.22 AA00
126vf8_P_DG2_DT3AAAAA00900.15 AA00
136vf8_P_DT3_DA4NANNANT00.31 ZZ01
146vf8_D_DG1_DC2B-ABA01140.27 BA01
156vf8_D_DC2_DC3A-BAB01490.41 AB01
166vf8_D_DC3_DG4B12BB04820.19 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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