Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (960 min)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6vf2_T_DC1_DG2 | NAN | NANT | 0 | 0.56 |
| 02 | 6vf2_T_DG2_DG3 | BBB | BB00 | 71 | 0.26 |
| 03 | 6vf2_T_DG3_DC4 | BBB | BB00 | 69 | 0.26 |
| 04 | 6vf2_T_DC4_DA5 | NAN | NANT | 0 | 1.13 |
| 05 | 6vf2_T_DA5_DT6 | BBB | BB00 | 67 | 0.24 |
| 06 | 6vf2_T_DT6_DA7 | B-A | BA10 | 72 | 0.42 |
| 07 | 6vf2_T_DA7_DC8 | A-B | AB05 | 40 | 0.16 |
| 08 | 6vf2_T_DC8_DG9 | BBB | BB00 | 31 | 0.41 |
| 09 | 6vf2_P_DC1_DG2 | AAA | AA00 | 88 | 0.21 |
| 10 | 6vf2_P_DG2_DT3 | AAA | AA00 | 83 | 0.17 |
| 11 | 6vf2_P_DT3_DA4 | AAA | AA00 | 90 | 0.17 |
| 12 | 6vf2_D_DG1_DC2 | B-A | BA01 | 16 | 0.28 |
| 13 | 6vf2_D_DC2_DC3 | A-B | AB01 | 55 | 0.39 |
| 14 | 6vf2_D_DC3_DG4 | B12 | BB04 | 85 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|