Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DNA Polymerase Mu, 8-oxorGTP:At Product State Ternary Complex, 50 mM Mg2+ (120 min)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6vf1_T_DC1_DG2 | A-B | AB01 | 65 | 0.25 |
| 02 | 6vf1_T_DG2_DG3 | B-A | BA05 | 89 | 0.15 |
| 03 | 6vf1_T_DG3_DC4 | BBB | BB01 | 56 | 0.28 |
| 04 | 6vf1_T_DC4_DA5 | NAN | NANT | 0 | 1.14 |
| 05 | 6vf1_T_DA5_DT6 | BBB | BB00 | 54 | 0.29 |
| 06 | 6vf1_T_DT6_DA7 | B-A | BA10 | 62 | 0.44 |
| 07 | 6vf1_T_DA7_DC8 | A-B | AB05 | 37 | 0.17 |
| 08 | 6vf1_T_DC8_DG9 | BBB | BB00 | 21 | 0.44 |
| 09 | 6vf1_P_DC1_DG2 | AAA | AA00 | 92 | 0.17 |
| 10 | 6vf1_P_DG2_DT3 | AAA | AA00 | 92 | 0.19 |
| 11 | 6vf1_P_DT3_DA4 | AAA | AA00 | 82 | 0.19 |
| 12 | 6vf1_D_DG1_DC2 | B-A | BA05 | 26 | 0.36 |
| 13 | 6vf1_D_DC2_DC.A3 | AAA | AA02 | 45 | 0.50 |
| 14 | 6vf1_D_DC2_DC.B3 | A-B | AB01 | 24 | 0.33 |
| 15 | 6vf1_D_DC.A3_DG.A4 | A-B | AB02 | 76 | 0.34 |
| 16 | 6vf1_D_DC.B3_DG.B4 | BBB | BB00 | 86 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|