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Conformers: ABBIImiBZICOPNSYNN
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DNA Polymerase Mu, 8-oxorGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (30 min)

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016vf0_T_DC1_DG2A-BAB01580.27 AB01
026vf0_T_DG2_DG3B-ABA05850.17 BA05
036vf0_T_DG3_DC4BBBBB01590.27 BB01
046vf0_T_DC4_DA5NANNANT01.12 OP21
056vf0_T_DA5_DT6BBBBB00480.27 BB00
066vf0_T_DT6_DA7B-ABA10690.43 BA10
076vf0_T_DA7_DC8A-BAB05780.15 AB05
086vf0_T_DC8_DG9BBBBB00220.45 BB00
096vf0_P_DC1_DG2AAAAA00930.16 AA00
106vf0_P_DG2_DT3AAAAA00900.18 AA00
116vf0_P_DT3_DA.A4AAAAA00880.16 AA00
126vf0_P_DT3_DA.B4AAAAA00790.17 AA00
136vf0_D_DG1_DC2B-ABA05220.37 BA05
146vf0_D_DC2_DC.A3AAAAA02340.50 AA02
156vf0_D_DC2_DC.B3A-BAB01360.32 AB01
166vf0_D_DC.A3_DG.A4A-BAB02680.35 AB02
176vf0_D_DC.B3_DG.B4BBBBB00870.20 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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