DNATCO v4.1: results

1.60 A resolution structure of the guanine riboswitch bound to guanine

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6ubu_B_G15_G16	NAN	NANT	0	0.60	AB02
02	6ubu_B_G16_A17	AAA	AA00	70	0.11	AA00
03	6ubu_B_A17_C18	AAw	AA06	66	0.23	AA06
04	6ubu_B_C18_A19	AAA	AA00	56	0.27	AA00
05	6ubu_B_A19_U20	AAA	AA00	93	0.11	AA00
06	6ubu_B_U20_A21	AAA	AA00	80	0.27	AA00
07	6ubu_B_A21_U22	NAN	NANT	0	0.73	OP04
08	6ubu_B_U22_A23	NAN	NANT	0	0.68	ZZ1S
09	6ubu_B_A23_A24	NAN	NANT	0	1.00	OP29
10	6ubu_B_A24_U25	OPN	OP01	79	0.27	OP01
11	6ubu_B_U25_C26	AAA	AA04	67	0.42	AA04
12	6ubu_B_C26_G27	AAA	AA00	59	0.29	AA00
13	6ubu_B_G27_C28	AAw	AA06	52	0.29	AA06
14	6ubu_B_C28_G29	AAA	AA00	90	0.13	AA00
15	6ubu_B_G29_U30	AAA	AA00	78	0.21	AA00
16	6ubu_B_U30_G31	AAA	AA00	71	0.17	AA00
17	6ubu_B_G31_G32	AAA	AA00	77	0.24	AA00
18	6ubu_B_G32_A33	AAA	AA00	62	0.27	AA00
19	6ubu_B_A33_U34	A-B	AB05	72	0.20	AB05
20	6ubu_B_U34_A35	NAN	NANT	0	1.01	OP22
21	6ubu_B_A35_U36	OPN	OP21	10	0.44	OP21
22	6ubu_B_U36_G37	OPN	OP11	87	0.39	OP11
23	6ubu_B_G37_G38	AAA	AA00	75	0.18	AA00
24	6ubu_B_G38_C39	NAN	NANT	0	2.13	OP25
25	6ubu_B_C39_A40	AAA	AA00	52	0.25	AA00
26	6ubu_B_A40_C41	AAA	AA00	89	0.10	AA00
27	6ubu_B_C41_G42	AAA	AA00	85	0.15	AA00
28	6ubu_B_G42_C43	AAA	AA00	85	0.19	AA00
29	6ubu_B_C43_A44	AAA	AA00	78	0.29	AA00
30	6ubu_B_A44_A45	AAA	AA00	82	0.21	AA00
31	6ubu_B_A45_G46	AAA	AA00	72	0.29	AA00
32	6ubu_B_G46_U47	NAN	NANT	0	0.39	AB04
33	6ubu_B_U47_U48	NAN	NANT	0	0.77	OP17
34	6ubu_B_U48_U49	NAN	NANT	0	0.62	OP20
35	6ubu_B_U49_C50	OPN	OP15	47	0.72	OP15
36	6ubu_B_C50_U51	AAA	AA08	54	0.42	AA08
37	6ubu_B_U51_A52	AAA	AA00	79	0.28	AA00
38	6ubu_B_A52_C53	AAA	AA09	76	0.18	AA09
39	6ubu_B_C53_C54	NAN	NANT	0	1.68	OP24
40	6ubu_B_C54_G55	AAA	AA00	53	0.25	AA00
41	6ubu_B_G55_G56	AAA	AA00	80	0.20	AA00
42	6ubu_B_G56_G57	AAA	AA00	89	0.16	AA00
43	6ubu_B_G57_C58	AAA	AA00	77	0.25	AA00
44	6ubu_B_C58_A59	AAA	AA00	89	0.17	AA00
45	6ubu_B_A59_C60	AAA	AA00	52	0.33	AA00
46	6ubu_B_C60_C61	AAA	AA00	77	0.14	AA00
47	6ubu_B_C61_G62	ICL	IC04	31	0.59	IC04
48	6ubu_B_G62_U63	OPN	OP22	27	0.32	OP22
49	6ubu_B_U63_A64	NAN	NANT	0	1.46	OP19
50	6ubu_B_A64_A65	NAN	NANT	0	0.44	AB01
51	6ubu_B_A65_A66	B-A	BA16	55	0.27	BA16
52	6ubu_B_A66_U67	NAN	NANT	0	0.72	AA10
53	6ubu_B_U67_G68	AAA	AA00	90	0.16	AA00
54	6ubu_B_G68_U69	AAA	AA00	92	0.15	AA00
55	6ubu_B_U69_C70	AAA	AA00	89	0.15	AA00
56	6ubu_B_C70_C71	AAA	AA08	85	0.25	AA08
57	6ubu_B_C71_G72	AAA	AA00	87	0.20	AA00
58	6ubu_B_G72_A73	NAN	NANT	0	0.46	IC04
59	6ubu_B_A73_C74	AAA	AA00	74	0.24	AA00
60	6ubu_B_C74_U75	AAA	AA00	91	0.19	AA00
61	6ubu_B_U75_A76	AAA	AA00	85	0.13	AA00
62	6ubu_B_A76_U77	AAA	AA00	86	0.14	AA00
63	6ubu_B_U77_G78	AAA	AA00	76	0.14	AA00
64	6ubu_B_G78_U79	AAA	AA00	85	0.15	AA00
65	6ubu_B_U79_C80	AAA	AA00	93	0.11	AA00
66	6ubu_B_C80_C81	AAA	AA00	94	0.16	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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