Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA hairpin structure containing one TNA nucleotide as template
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6u7y_A_C1_U2 | AAA | AA08 | 29 | 0.39 |
| 02 | 6u7y_A_U2_G3 | AAA | AA08 | 82 | 0.24 |
| 03 | 6u7y_A_G3_C4 | AAw | AA01 | 52 | 0.33 |
| 04 | 6u7y_A_C4_U5 | AAw | AA11 | 25 | 0.52 |
| 05 | 6u7y_A_U5_G6 | AAA | AA08 | 42 | 0.41 |
| 06 | 6u7y_A_G6_G7 | AAA | AA08 | 16 | 0.37 |
| 07 | 6u7y_A_G7_C8 | AAA | AA08 | 17 | 0.40 |
| 08 | 6u7y_A_C8_U9 | AAA | AA00 | 67 | 0.21 |
| 09 | 6u7y_A_U9_A10 | A-B | AB04 | 59 | 0.28 |
| 10 | 6u7y_A_A10_A11 | OPN | OP26 | 65 | 0.45 |
| 11 | 6u7y_A_A11_G12 | AAA | AA04 | 48 | 0.52 |
| 12 | 6u7y_A_G12_G13 | AAA | AA00 | 44 | 0.34 |
| 13 | 6u7y_A_C15_C16 | AAA | AA08 | 59 | 0.22 |
| 14 | 6u7y_A_C16_G17 | AAA | AA00 | 61 | 0.39 |
| 15 | 6u7y_A_G17_A18 | OPN | OP04 | 19 | 0.42 |
| 16 | 6u7y_A_A18_A19 | AAA | AA08 | 67 | 0.40 |
| 17 | 6u7y_A_A19_A20 | AAA | AA00 | 26 | 0.32 |
| 18 | 6u7y_A_A20_G21 | NAN | NANT | 0 | 0.69 |
| 19 | 6u7y_A_G21_G22 | AAA | AA08 | 80 | 0.27 |
| 20 | 6u7y_B_C1_U2 | AAA | AA00 | 39 | 0.28 |
| 21 | 6u7y_B_U2_A3 | NAN | NANT | 0 | 0.46 |
| 22 | 6u7y_B_A3_U4 | NAN | NANT | 0 | 1.13 |
| 23 | 6u7y_B_U4_G5 | NAN | NANT | 0 | 1.11 |
| 24 | 6u7y_B_G5_C6 | AAw | AA01 | 72 | 0.20 |
| 25 | 6u7y_B_C6_C7 | AAA | AA08 | 40 | 0.34 |
| 26 | 6u7y_B_C7_U8 | AAw | AA01 | 50 | 0.31 |
| 27 | 6u7y_B_U8_G9 | AAA | AA08 | 52 | 0.33 |
| 28 | 6u7y_B_G9_C10 | AAA | AA08 | 69 | 0.15 |
| 29 | 6u7y_B_C10_U11 | AAA | AA08 | 63 | 0.20 |
| 30 | 6u7y_B_U11_G12 | A-B | AB05 | 42 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
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| B | ||||
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