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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Archaeoglobus fulgidus Argonaute protein with cognate DNA oligoduplex 5'-pATTGTACGTACAAT

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016tuo_R_DA1_DT2NANNANT01.06 OP05
026tuo_R_DT2_DT.A3AAwAA01640.33 AA01
036tuo_R_DT2_DT.B3AAwAA01450.38 AA01
046tuo_R_DT.A3_DG.A4NANNANT00.51 AA01
056tuo_R_DT.B3_DG.B4AAAAA00750.28 AA00
066tuo_R_DG.A4_DT.A5NANNANT00.34 AA01
076tuo_R_DG.B4_DT.B5A-BAB01680.29 AB01
086tuo_R_DT.A5_DA6NANNANT00.43 BB16
096tuo_R_DT.B5_DA6BBBBB00870.20 BB00
106tuo_R_DA6_DC7BBBBB00640.20 BB00
116tuo_R_DC7_DG8B-ABA08640.43 BA08
126tuo_R_DG8_DT9NANNANT00.37 BB10
136tuo_R_DT9_DA10NANNANT00.54 BA05
146tuo_R_DA10_DC11NANNANT00.54 BB16
156tuo_R_DC11_DA12miBBB14690.23 BB14
166tuo_R_DA12_DA13BBBBB01850.21 BB01
176tuo_R_DA13_DT14NANNANT00.52 BB15
186tuo_S_DA1_DT2BBBBB00570.29 BB00
196tuo_S_DT2_DT3B12BB04230.25 BB04
206tuo_S_DT3_DG4NANNANT00.45 BA08
216tuo_S_DG4_DT5NANNANT00.41 BB02
226tuo_S_DT5_DA6NANNANT00.38 BB10
236tuo_S_DA6_DC7miBBB10720.26 BB10
246tuo_S_DC7_DG8NANNANT00.37 BA13
256tuo_S_DG8_DT9NANNANT00.61 BB17
266tuo_S_DT9_DA10A-BAB02700.39 AB02
276tuo_S_DA10_DC11miBBB15360.33 BB15
286tuo_S_DC11_DA12NANNANT00.37 BB07
296tuo_S_DA12_DA13BBBBB00590.20 BB00
306tuo_S_DA13_DT14NANNANT01.35 AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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