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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENT

Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016tna_A_G1_C2NANNANT00.44 AA11
026tna_A_C2_G3AAAAA08420.39 AA08
036tna_A_G3_G4AAwAA01360.43 AA01
046tna_A_G4_A5AAAAA08760.23 AA08
056tna_A_A5_U6AAAAA08540.26 AA08
066tna_A_U6_U7NANNANT00.44 AA08
076tna_A_U7_U8OPNOP11320.39 OP11
086tna_A_U8_A9NANNANT00.92 IC02
096tna_A_A9_2MG10NANNANT01.19 OP26
106tna_A_2MG10_C11NANNANT00.52 AA04
116tna_A_C11_U12AAAAA04280.26 AA04
126tna_A_U12_C13AAwAA10720.27 AA10
136tna_A_C13_A14AAwAA1070.55 AA10
146tna_A_A14_G15AAAAA08180.56 AA08
156tna_A_G15_H2U16NANNANT01.12 OP31
166tna_A_H2U16_H2U17NANNANT01.53 OP16
176tna_A_H2U17_G18NANNANT01.33 OP18
186tna_A_G18_G19ICLIC05670.31 IC05
196tna_A_G19_G20OPNOP11180.63 OP11
206tna_A_G20_A21NANNANT01.44 OP17
216tna_A_A21_G22NANNANT00.60 IC07
226tna_A_G22_A23AAAAA00530.22 AA00
236tna_A_A23_G24AAAAA03840.15 AA03
246tna_A_G24_C25NANNANT00.36 AA10
256tna_A_C25_M2G26AAAAA08390.55 AA08
266tna_A_M2G26_C27AAAAA03790.18 AA03
276tna_A_C27_C28AAAAA04480.35 AA04
286tna_A_C28_A29AAAAA04480.29 AA04
296tna_A_A29_G30AAAAA08650.29 AA08
306tna_A_G30_A31NANNANT00.61 AA10
316tna_A_A31_OMC32AAAAA08300.53 AA08
326tna_A_OMC32_U33AAAAA04380.44 AA04
336tna_A_U33_OMG34NANNANT00.59 OP03
346tna_A_OMG34_A35NANNANT00.49 AA04
356tna_A_A35_A36NANNANT00.39 AA10
366tna_A_A36_YG37NANNANT00.43 AA03
376tna_A_YG37_A38NANNANT00.61 AA05
386tna_A_5MC40_U41AAAAA03610.33 AA03
396tna_A_U41_G42AAAAA00930.19 AA00
406tna_A_G42_G43AAAAA04890.16 AA04
416tna_A_G43_A44AAAAA08770.24 AA08
426tna_A_A44_G45AAAAA00290.41 AA00
436tna_A_G45_7MG46NANNANT00.66 IC04
446tna_A_7MG46_U47NANNANT00.93 OP13
456tna_A_U47_C48NANNANT01.07 OP17
466tna_A_C48_5MC49NANNANT01.32 OP05
476tna_A_5MC49_U50AAwAA10590.31 AA10
486tna_A_U50_G51AAAAA08200.31 AA08
496tna_A_G51_U52AAAAA00500.23 AA00
506tna_A_U52_G53AAAAA08720.26 AA08
516tna_A_G53_5MU54AAAAA00250.37 AA00
526tna_A_C56_G57NANNANT00.52 AA03
536tna_A_G57_1MA58NANNANT00.65 IC01
546tna_A_1MA58_U59NANNANT02.09 OP17
556tna_A_U59_C60NANNANT00.66 BB03
566tna_A_C60_C61NANNANT00.38 OP12
576tna_A_C61_A62AAAAA04690.30 AA04
586tna_A_A62_C63AAAAA00890.16 AA00
596tna_A_C63_A64AAAAA04920.14 AA04
606tna_A_A64_G65AAAAA04750.21 AA04
616tna_A_G65_A66AAAAA08940.13 AA08
626tna_A_A66_A67AAAAA08870.22 AA08
636tna_A_A67_U68AAAAA08710.17 AA08
646tna_A_U68_U69AAAAA00320.34 AA00
656tna_A_U69_C70AAAAA04500.27 AA04
666tna_A_C70_G71AAAAA00880.14 AA00
676tna_A_G71_C72AAAAA08850.27 AA08
686tna_A_C72_A73AAAAA00670.33 AA00
696tna_A_A73_C74AAAAA04910.22 AA04
706tna_A_C74_C75AAAAA08300.40 AA08
716tna_A_C75_A76NANNANT02.06 OP28

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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