Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of the GGCT site-bound MH1 domain of Smad5 containing a GGGS insertion in the Loop1
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6tce_B_DT1_DG2 | BB2 | BB07 | 37 | 0.35 |
| 02 | 6tce_B_DG2_DC3 | BBB | BB01 | 58 | 0.23 |
| 03 | 6tce_B_DC3_DA4 | BBB | BB00 | 48 | 0.22 |
| 04 | 6tce_B_DA4_DG5 | BBB | BB01 | 64 | 0.21 |
| 05 | 6tce_B_DG5_DG6 | B12 | BB04 | 44 | 0.24 |
| 06 | 6tce_B_DG6_DC7 | BBB | BB00 | 26 | 0.19 |
| 07 | 6tce_B_DC7_DT8 | BBB | BB00 | 22 | 0.20 |
| 08 | 6tce_B_DT8_DA9 | BB2 | BB07 | 53 | 0.40 |
| 09 | 6tce_B_DA9_DG10 | BBB | BB00 | 34 | 0.28 |
| 10 | 6tce_B_DG10_DC11 | miB | BB10 | 18 | 0.37 |
| 11 | 6tce_B_DC11_DC12 | BBB | BB00 | 27 | 0.20 |
| 12 | 6tce_B_DC12_DT13 | BBB | BB01 | 64 | 0.19 |
| 13 | 6tce_B_DT13_DG14 | BBB | BB00 | 81 | 0.21 |
| 14 | 6tce_B_DG14_DC15 | miB | BB10 | 47 | 0.43 |
| 15 | 6tce_B_DC15_DA16 | NAN | NANT | 0 | 0.59 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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