DNATCO v4.1: results

Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6tb7_A_G1_G2	AAA	AA00	74	0.23	AA00
02	6tb7_A_G2_C3	AAA	AA00	82	0.18	AA00
03	6tb7_A_C3_U4	AAA	AA03	74	0.27	AA03
04	6tb7_A_U4_U5	AAA	AA00	73	0.24	AA00
05	6tb7_A_U5_C6	AAA	AA04	92	0.23	AA04
06	6tb7_A_C6_A7	A-B	AB05	79	0.27	AB05
07	6tb7_A_A7_A8	NAN	NANT	0	0.62	OP26
08	6tb7_A_A8_C9	AAA	AA08	59	0.33	AA08
09	6tb7_A_C9_A10	NAN	NANT	0	0.44	IC06
10	6tb7_A_A10_A11	NAN	NANT	0	0.52	OP13
11	6tb7_A_A11_C12	NAN	NANT	0	1.10	OP30
12	6tb7_A_C12_C13	AAA	AA00	46	0.44	AA00
13	6tb7_A_C13_C14	AAA	AA00	66	0.34	AA00
14	6tb7_A_C14_C15	AAA	AA08	72	0.30	AA08
15	6tb7_A_C15_G16	OPN	OP29	27	0.33	OP29
16	6tb7_A_G16_U17	AAA	AA00	25	0.33	AA00
17	6tb7_A_U17_A18	AAA	AA00	82	0.14	AA00
18	6tb7_A_A18_G19	AAA	AA00	78	0.22	AA00
19	6tb7_A_G19_G20	AAw	AA01	85	0.27	AA01
20	6tb7_A_G20_U21	AAA	AA00	43	0.30	AA00
21	6tb7_A_U21_U22	AAA	AA00	69	0.18	AA00
22	6tb7_A_U22_G23	AAA	AA08	82	0.22	AA08
23	6tb7_A_G23_G24	AAw	AA10	79	0.15	AA10
24	6tb7_A_G24_G25	AAA	AA08	45	0.28	AA08
25	6tb7_A_G25_C26	AAA	AA00	90	0.15	AA00
26	6tb7_A_C26_C27	AAA	AA00	81	0.20	AA00
27	6tb7_A_C27_G28	AAA	AA00	79	0.23	AA00
28	6tb7_A_G28_A29	OPN	OP03	82	0.09	OP03
29	6tb7_A_A29_A30	AAA	AA08	62	0.30	AA08
30	6tb7_A_A30_A31	AAA	AA04	67	0.26	AA04
31	6tb7_A_A31_G32	AAA	AA08	9	0.84	AA08
32	6tb7_A_G32_G33	AAA	AA08	70	0.27	AA08
33	6tb7_A_G33_C34	AAA	AA08	58	0.28	AA08
34	6tb7_A_C34_A35	NAN	NANT	0	0.47	AA03
35	6tb7_A_A35_G36	NAN	NANT	0	1.95	OP09
36	6tb7_A_G36_C37	NAN	NANT	0	0.68	OP14
37	6tb7_A_C37_G38	NAN	NANT	0	1.01	OP20
38	6tb7_A_G38_A39	NAN	NANT	0	1.15	OP31
39	6tb7_A_A39_A40	AAA	AA08	90	0.24	AA08
40	6tb7_A_A40_U41	AAA	AA00	73	0.28	AA00
41	6tb7_A_U41_C42	AAA	AA00	67	0.23	AA00
42	6tb7_A_C42_U43	AAA	AA03	90	0.15	AA03
43	6tb7_A_U43_A44	AAA	AA00	81	0.16	AA00
44	6tb7_A_A44_C45	AAA	AA08	85	0.18	AA08
45	6tb7_A_C45_U46	AAA	AA03	65	0.31	AA03
46	6tb7_A_U46_G47	AAA	AA08	76	0.25	AA08
47	6tb7_A_G47_G48	AAw	AA01	65	0.33	AA01
48	6tb7_A_G48_A49	AAA	AA08	84	0.14	AA08
49	6tb7_A_A49_G50	AAA	AA08	77	0.15	AA08
50	6tb7_A_G50_C51	AAA	AA08	86	0.15	AA08
51	6tb7_A_C51_C52	AAA	AA00	82	0.20	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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