DNATCO v4.1: results

Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs

Results of the assignment of 220 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6sx6-m10_A_DG1_DC2	SYN	BBS1	28	0.58	BBS1
002	6sx6-m1_A_DG1_DC2	SYN	BBS1	26	0.61	BBS1
003	6sx6-m2_A_DG1_DC2	SYN	BBS1	32	0.59	BBS1
004	6sx6-m3_A_DG1_DC2	SYN	BBS1	29	0.62	BBS1
005	6sx6-m4_A_DG1_DC2	SYN	BBS1	30	0.59	BBS1
006	6sx6-m5_A_DG1_DC2	SYN	BBS1	20	0.59	BBS1
007	6sx6-m6_A_DG1_DC2	SYN	BBS1	28	0.60	BBS1
008	6sx6-m7_A_DG1_DC2	SYN	BBS1	27	0.61	BBS1
009	6sx6-m8_A_DG1_DC2	SYN	BBS1	25	0.60	BBS1
010	6sx6-m9_A_DG1_DC2	SYN	BBS1	23	0.62	BBS1
011	6sx6-m10_A_DC2_DG3	NAN	NANT	0	1.31	BB03
012	6sx6-m1_A_DC2_DG3	NAN	NANT	0	1.60	OP04
013	6sx6-m2_A_DC2_DG3	NAN	NANT	0	1.50	IC06
014	6sx6-m3_A_DC2_DG3	NAN	NANT	0	1.32	BB03
015	6sx6-m4_A_DC2_DG3	NAN	NANT	0	1.33	BB03
016	6sx6-m5_A_DC2_DG3	NAN	NANT	0	1.55	IC06
017	6sx6-m6_A_DC2_DG3	NAN	NANT	0	1.76	OP04
018	6sx6-m7_A_DC2_DG3	NAN	NANT	0	1.31	BA10
019	6sx6-m8_A_DC2_DG3	NAN	NANT	0	1.51	IC06
020	6sx6-m9_A_DC2_DG3	NAN	NANT	0	1.31	BB03
021	6sx6-m10_A_DG3_DG4	NAN	NANT	0	0.90	BB08
022	6sx6-m1_A_DG3_DG4	NAN	NANT	0	0.43	BB00
023	6sx6-m2_A_DG3_DG4	NAN	NANT	0	0.47	BB03
024	6sx6-m3_A_DG3_DG4	NAN	NANT	0	0.94	BB08
025	6sx6-m4_A_DG3_DG4	NAN	NANT	0	0.88	BB08
026	6sx6-m5_A_DG3_DG4	NAN	NANT	0	0.84	BB03
027	6sx6-m6_A_DG3_DG4	NAN	NANT	0	0.61	BB03
028	6sx6-m7_A_DG3_DG4	NAN	NANT	0	0.89	BB08
029	6sx6-m8_A_DG3_DG4	NAN	NANT	0	0.61	BB01
030	6sx6-m9_A_DG3_DG4	NAN	NANT	0	1.04	BB00
031	6sx6-m10_A_DG4_DA5	NAN	NANT	0	0.83	BB03
032	6sx6-m1_A_DG4_DA5	NAN	NANT	0	0.83	BB03
033	6sx6-m2_A_DG4_DA5	NAN	NANT	0	0.82	BB03
034	6sx6-m3_A_DG4_DA5	NAN	NANT	0	0.84	BB03
035	6sx6-m4_A_DG4_DA5	NAN	NANT	0	0.80	BB03
036	6sx6-m5_A_DG4_DA5	NAN	NANT	0	0.82	BB03
037	6sx6-m6_A_DG4_DA5	NAN	NANT	0	0.87	BB03
038	6sx6-m7_A_DG4_DA5	NAN	NANT	0	0.82	BB03
039	6sx6-m8_A_DG4_DA5	NAN	NANT	0	0.79	BB03
040	6sx6-m9_A_DG4_DA5	NAN	NANT	0	0.77	BB03
041	6sx6-m10_A_DA5_DG6	A-B	AB03	25	0.55	AB03
042	6sx6-m1_A_DA5_DG6	BBB	BB00	31	0.47	BB00
043	6sx6-m2_A_DA5_DG6	BBB	BB00	26	0.49	BB00
044	6sx6-m3_A_DA5_DG6	miB	BB12	19	0.41	BB12
045	6sx6-m4_A_DA5_DG6	BBB	BB00	23	0.47	BB00
046	6sx6-m5_A_DA5_DG6	NAN	NANT	0	0.81	OP22
047	6sx6-m6_A_DA5_DG6	BBB	BB00	30	0.47	BB00
048	6sx6-m7_A_DA5_DG6	BBB	BB00	14	0.46	BB00
049	6sx6-m8_A_DA5_DG6	NAN	NANT	0	0.57	BB08
050	6sx6-m9_A_DA5_DG6	BBB	BB00	23	0.46	BB00
051	6sx6-m10_A_DG6_DG7	BB2	BB07	35	0.32	BB07
052	6sx6-m1_A_DG6_DG7	BB2	BB07	39	0.29	BB07
053	6sx6-m2_A_DG6_DG7	BB2	BB07	32	0.31	BB07
054	6sx6-m3_A_DG6_DG7	NAN	NANT	0	0.59	BB03
055	6sx6-m4_A_DG6_DG7	BB2	BB07	38	0.31	BB07
056	6sx6-m5_A_DG6_DG7	BBB	BB00	78	0.19	BB00
057	6sx6-m6_A_DG6_DG7	BB2	BB07	39	0.28	BB07
058	6sx6-m7_A_DG6_DG7	BB2	BB07	39	0.31	BB07
059	6sx6-m8_A_DG6_DG7	BBB	BB00	71	0.21	BB00
060	6sx6-m9_A_DG6_DG7	BB2	BB07	40	0.28	BB07
061	6sx6-m10_A_DG7_DG8	BBB	BB00	44	0.40	BB00
062	6sx6-m1_A_DG7_DG8	BBB	BB00	47	0.39	BB00
063	6sx6-m2_A_DG7_DG8	BBB	BB00	48	0.39	BB00
064	6sx6-m3_A_DG7_DG8	BBB	BB00	49	0.38	BB00
065	6sx6-m4_A_DG7_DG8	BBB	BB00	47	0.39	BB00
066	6sx6-m5_A_DG7_DG8	BBB	BB00	51	0.38	BB00
067	6sx6-m6_A_DG7_DG8	BBB	BB00	40	0.43	BB00
068	6sx6-m7_A_DG7_DG8	BBB	BB00	50	0.37	BB00
069	6sx6-m8_A_DG7_DG8	BBB	BB00	63	0.31	BB00
070	6sx6-m9_A_DG7_DG8	BBB	BB00	53	0.37	BB00
071	6sx6-m10_A_DG8_DG9	BBB	BB00	27	0.54	BB00
072	6sx6-m1_A_DG8_DG9	BBB	BB00	32	0.53	BB00
073	6sx6-m2_A_DG8_DG9	BBB	BB00	30	0.53	BB00
074	6sx6-m3_A_DG8_DG9	BBB	BB00	29	0.54	BB00
075	6sx6-m4_A_DG8_DG9	BBB	BB00	29	0.53	BB00
076	6sx6-m5_A_DG8_DG9	BBB	BB00	31	0.53	BB00
077	6sx6-m6_A_DG8_DG9	BBB	BB00	28	0.54	BB00
078	6sx6-m7_A_DG8_DG9	BBB	BB00	28	0.54	BB00
079	6sx6-m8_A_DG8_DG9	BBB	BB00	29	0.55	BB00
080	6sx6-m9_A_DG8_DG9	BBB	BB00	31	0.53	BB00
081	6sx6-m10_A_DG9_DA10	NAN	NANT	0	1.74	OP19
082	6sx6-m1_A_DG9_DA10	NAN	NANT	0	1.73	OP19
083	6sx6-m2_A_DG9_DA10	NAN	NANT	0	1.66	OP19
084	6sx6-m3_A_DG9_DA10	NAN	NANT	0	1.75	OP19
085	6sx6-m4_A_DG9_DA10	NAN	NANT	0	1.75	OP19
086	6sx6-m5_A_DG9_DA10	NAN	NANT	0	1.71	OP19
087	6sx6-m6_A_DG9_DA10	NAN	NANT	0	1.75	OP19
088	6sx6-m7_A_DG9_DA10	NAN	NANT	0	1.70	OP19
089	6sx6-m8_A_DG9_DA10	NAN	NANT	0	1.75	OP19
090	6sx6-m9_A_DG9_DA10	NAN	NANT	0	1.73	OP19
091	6sx6-m10_A_DA10_DG11	NAN	NANT	0	0.69	IC03
092	6sx6-m1_A_DA10_DG11	NAN	NANT	0	0.69	IC03
093	6sx6-m2_A_DA10_DG11	NAN	NANT	0	0.76	IC03
094	6sx6-m3_A_DA10_DG11	NAN	NANT	0	0.68	IC03
095	6sx6-m4_A_DA10_DG11	NAN	NANT	0	0.67	IC03
096	6sx6-m5_A_DA10_DG11	NAN	NANT	0	0.72	IC03
097	6sx6-m6_A_DA10_DG11	NAN	NANT	0	0.67	IC03
098	6sx6-m7_A_DA10_DG11	NAN	NANT	0	0.75	IC03
099	6sx6-m8_A_DA10_DG11	NAN	NANT	0	0.68	IC03
100	6sx6-m9_A_DA10_DG11	NAN	NANT	0	0.68	IC03
101	6sx6-m10_A_DG11_DG12	BBw	BB16	58	0.52	BB16
102	6sx6-m1_A_DG11_DG12	BBw	BB16	64	0.51	BB16
103	6sx6-m2_A_DG11_DG12	BBB	BB00	56	0.33	BB00
104	6sx6-m3_A_DG11_DG12	BBw	BB16	64	0.50	BB16
105	6sx6-m4_A_DG11_DG12	NAN	NANT	0	0.48	BB03
106	6sx6-m5_A_DG11_DG12	BBB	BB00	28	0.41	BB00
107	6sx6-m6_A_DG11_DG12	BBw	BB16	64	0.51	BB16
108	6sx6-m7_A_DG11_DG12	BBB	BB00	60	0.32	BB00
109	6sx6-m8_A_DG11_DG12	BBw	BB16	63	0.51	BB16
110	6sx6-m9_A_DG11_DG12	BBw	BB16	62	0.53	BB16
111	6sx6-m10_B_DG1_DC2	SYN	BBS1	27	0.60	BBS1
112	6sx6-m1_B_DG1_DC2	NAN	NANT	0	0.63	BBS1
113	6sx6-m2_B_DG1_DC2	SYN	BBS1	35	0.56	BBS1
114	6sx6-m3_B_DG1_DC2	NAN	NANT	0	0.65	BBS1
115	6sx6-m4_B_DG1_DC2	NAN	NANT	0	0.64	BBS1
116	6sx6-m5_B_DG1_DC2	NAN	NANT	0	0.62	BBS1
117	6sx6-m6_B_DG1_DC2	SYN	BBS1	18	0.59	BBS1
118	6sx6-m7_B_DG1_DC2	SYN	BBS1	35	0.60	BBS1
119	6sx6-m8_B_DG1_DC2	SYN	BBS1	23	0.61	BBS1
120	6sx6-m9_B_DG1_DC2	NAN	NANT	0	0.60	BBS1
121	6sx6-m10_B_DC2_DG3	NAN	NANT	0	1.52	IC03
122	6sx6-m1_B_DC2_DG3	NAN	NANT	0	1.38	IC06
123	6sx6-m2_B_DC2_DG3	NAN	NANT	0	1.49	IC03
124	6sx6-m3_B_DC2_DG3	NAN	NANT	0	1.35	IC06
125	6sx6-m4_B_DC2_DG3	NAN	NANT	0	1.36	IC06
126	6sx6-m5_B_DC2_DG3	NAN	NANT	0	1.34	IC06
127	6sx6-m6_B_DC2_DG3	NAN	NANT	0	1.46	IC06
128	6sx6-m7_B_DC2_DG3	NAN	NANT	0	1.53	BB03
129	6sx6-m8_B_DC2_DG3	NAN	NANT	0	1.56	OP04
130	6sx6-m9_B_DC2_DG3	NAN	NANT	0	1.51	OP04
131	6sx6-m10_B_DG3_DG4	NAN	NANT	0	1.09	BB00
132	6sx6-m1_B_DG3_DG4	NAN	NANT	0	0.85	BB01
133	6sx6-m2_B_DG3_DG4	NAN	NANT	0	1.10	BB00
134	6sx6-m3_B_DG3_DG4	NAN	NANT	0	0.91	BB00
135	6sx6-m4_B_DG3_DG4	NAN	NANT	0	0.90	BB01
136	6sx6-m5_B_DG3_DG4	BBB	BB00	38	0.38	BB00
137	6sx6-m6_B_DG3_DG4	NAN	NANT	0	0.80	BB00
138	6sx6-m7_B_DG3_DG4	NAN	NANT	0	1.10	BB00
139	6sx6-m8_B_DG3_DG4	NAN	NANT	0	0.41	BB01
140	6sx6-m9_B_DG3_DG4	NAN	NANT	0	0.80	BB00
141	6sx6-m10_B_DG4_DA5	NAN	NANT	0	0.73	BB03
142	6sx6-m1_B_DG4_DA5	NAN	NANT	0	0.73	BB03
143	6sx6-m2_B_DG4_DA5	NAN	NANT	0	0.74	BB03
144	6sx6-m3_B_DG4_DA5	NAN	NANT	0	0.72	BB03
145	6sx6-m4_B_DG4_DA5	NAN	NANT	0	0.74	BB03
146	6sx6-m5_B_DG4_DA5	NAN	NANT	0	0.81	BB03
147	6sx6-m6_B_DG4_DA5	NAN	NANT	0	0.96	BB03
148	6sx6-m7_B_DG4_DA5	NAN	NANT	0	0.73	BB03
149	6sx6-m8_B_DG4_DA5	NAN	NANT	0	0.86	BB03
150	6sx6-m9_B_DG4_DA5	NAN	NANT	0	0.76	BB03
151	6sx6-m10_B_DA5_DG6	BB2	BB07	25	0.59	BB07
152	6sx6-m1_B_DA5_DG6	NAN	NANT	0	0.55	BB08
153	6sx6-m2_B_DA5_DG6	NAN	NANT	0	0.53	BB08
154	6sx6-m3_B_DA5_DG6	NAN	NANT	0	0.54	BB08
155	6sx6-m4_B_DA5_DG6	BB2	BB07	20	0.59	BB07
156	6sx6-m5_B_DA5_DG6	BBB	BB00	21	0.46	BB00
157	6sx6-m6_B_DA5_DG6	NAN	NANT	0	0.90	BB08
158	6sx6-m7_B_DA5_DG6	NAN	NANT	0	0.63	BA17
159	6sx6-m8_B_DA5_DG6	BBB	BB00	30	0.47	BB00
160	6sx6-m9_B_DA5_DG6	BB2	BB07	17	0.59	BB07
161	6sx6-m10_B_DG6_DG7	NAN	NANT	0	0.35	BB08
162	6sx6-m1_B_DG6_DG7	BBB	BB00	76	0.20	BB00
163	6sx6-m2_B_DG6_DG7	BBB	BB00	73	0.20	BB00
164	6sx6-m3_B_DG6_DG7	BBB	BB00	67	0.24	BB00
165	6sx6-m4_B_DG6_DG7	NAN	NANT	0	0.40	BB08
166	6sx6-m5_B_DG6_DG7	BB2	BB07	33	0.31	BB07
167	6sx6-m6_B_DG6_DG7	NAN	NANT	0	0.39	BB03
168	6sx6-m7_B_DG6_DG7	BB2	BB07	37	0.29	BB07
169	6sx6-m8_B_DG6_DG7	BB2	BB07	36	0.31	BB07
170	6sx6-m9_B_DG6_DG7	miB	BB12	79	0.26	BB12
171	6sx6-m10_B_DG7_DG8	BBB	BB00	17	0.45	BB00
172	6sx6-m1_B_DG7_DG8	BBB	BB00	64	0.34	BB00
173	6sx6-m2_B_DG7_DG8	BBB	BB00	64	0.32	BB00
174	6sx6-m3_B_DG7_DG8	BBB	BB00	62	0.32	BB00
175	6sx6-m4_B_DG7_DG8	BBB	BB00	25	0.42	BB00
176	6sx6-m5_B_DG7_DG8	BBB	BB00	43	0.41	BB00
177	6sx6-m6_B_DG7_DG8	BBB	BB00	45	0.39	BB00
178	6sx6-m7_B_DG7_DG8	BBB	BB00	56	0.36	BB00
179	6sx6-m8_B_DG7_DG8	BBB	BB00	45	0.40	BB00
180	6sx6-m9_B_DG7_DG8	BBw	BB16	86	0.39	BB16
181	6sx6-m10_B_DG8_DG9	BBB	BB00	30	0.54	BB00
182	6sx6-m1_B_DG8_DG9	BBB	BB00	30	0.55	BB00
183	6sx6-m2_B_DG8_DG9	BBB	BB00	32	0.51	BB00
184	6sx6-m3_B_DG8_DG9	BBB	BB00	28	0.54	BB00
185	6sx6-m4_B_DG8_DG9	BBB	BB00	28	0.55	BB00
186	6sx6-m5_B_DG8_DG9	BBB	BB00	30	0.54	BB00
187	6sx6-m6_B_DG8_DG9	BBB	BB00	32	0.52	BB00
188	6sx6-m7_B_DG8_DG9	BBB	BB00	25	0.56	BB00
189	6sx6-m8_B_DG8_DG9	BBB	BB00	28	0.55	BB00
190	6sx6-m9_B_DG8_DG9	BBB	BB00	29	0.58	BB00
191	6sx6-m10_B_DG9_DA10	NAN	NANT	0	1.75	OP19
192	6sx6-m1_B_DG9_DA10	NAN	NANT	0	1.74	OP19
193	6sx6-m2_B_DG9_DA10	NAN	NANT	0	1.65	OP19
194	6sx6-m3_B_DG9_DA10	NAN	NANT	0	1.75	OP19
195	6sx6-m4_B_DG9_DA10	NAN	NANT	0	1.73	OP19
196	6sx6-m5_B_DG9_DA10	NAN	NANT	0	1.75	OP19
197	6sx6-m6_B_DG9_DA10	NAN	NANT	0	1.65	OP19
198	6sx6-m7_B_DG9_DA10	NAN	NANT	0	1.74	OP19
199	6sx6-m8_B_DG9_DA10	NAN	NANT	0	1.75	OP19
200	6sx6-m9_B_DG9_DA10	NAN	NANT	0	1.78	BB08
201	6sx6-m10_B_DA10_DG11	NAN	NANT	0	0.68	IC03
202	6sx6-m1_B_DA10_DG11	NAN	NANT	0	0.69	IC03
203	6sx6-m2_B_DA10_DG11	NAN	NANT	0	0.75	IC03
204	6sx6-m3_B_DA10_DG11	NAN	NANT	0	0.68	IC03
205	6sx6-m4_B_DA10_DG11	NAN	NANT	0	0.70	IC03
206	6sx6-m5_B_DA10_DG11	NAN	NANT	0	0.67	IC03
207	6sx6-m6_B_DA10_DG11	NAN	NANT	0	0.77	IC03
208	6sx6-m7_B_DA10_DG11	NAN	NANT	0	0.70	IC03
209	6sx6-m8_B_DA10_DG11	NAN	NANT	0	0.68	IC03
210	6sx6-m9_B_DA10_DG11	NAN	NANT	0	0.68	IC03
211	6sx6-m10_B_DG11_DG12	BBw	BB16	62	0.50	BB16
212	6sx6-m1_B_DG11_DG12	BBw	BB16	64	0.52	BB16
213	6sx6-m2_B_DG11_DG12	BBB	BB00	60	0.32	BB00
214	6sx6-m3_B_DG11_DG12	BBw	BB16	65	0.50	BB16
215	6sx6-m4_B_DG11_DG12	BBw	BB16	61	0.54	BB16
216	6sx6-m5_B_DG11_DG12	BBw	BB16	64	0.50	BB16
217	6sx6-m6_B_DG11_DG12	BBB	BB00	59	0.33	BB00
218	6sx6-m7_B_DG11_DG12	BBw	BB16	58	0.56	BB16
219	6sx6-m8_B_DG11_DG12	BBw	BB16	64	0.50	BB16
220	6sx6-m9_B_DG11_DG12	BBw	BB16	63	0.50	BB16

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 220 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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