DNATCO v4.1: results

Structure of the Glutamine II Riboswitch

Results of the assignment of 98 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6qn3_A_C1_G2	AAw	AA01	57	0.40	AA01
02	6qn3_A_G2_U3	AAA	AA00	65	0.18	AA00
03	6qn3_A_U3_U4	AAA	AA00	84	0.16	AA00
04	6qn3_A_U4_C5	AAw	AA01	75	0.14	AA01
05	6qn3_A_C5_A6	AAA	AA00	56	0.29	AA00
06	6qn3_A_A6_C7	AAA	AA08	74	0.30	AA08
07	6qn3_A_C7_C8	AAA	AA04	77	0.28	AA04
08	6qn3_A_C8_C9	AAA	AA00	77	0.18	AA00
09	6qn3_A_C9_U10	AAA	AA08	83	0.21	AA08
10	6qn3_A_U10_U11	OPN	OP09	48	0.26	OP09
11	6qn3_A_U11_C12	OPN	OP20	78	0.28	OP20
12	6qn3_A_C12_G13	NAN	NANT	0	0.37	ZZ1S
13	6qn3_A_G13_G14	NAN	NANT	0	0.76	AAS1
14	6qn3_A_G14_G15	AAw	AA01	74	0.25	AA01
15	6qn3_A_G15_G16	AAA	AA08	73	0.27	AA08
16	6qn3_A_G16_C17	AAA	AA08	86	0.12	AA08
17	6qn3_A_C17_G18	NAN	NANT	0	0.77	OP02
18	6qn3_A_G18_C19	NAN	NANT	0	0.79	OP08
19	6qn3_A_C19_A20	NAN	NANT	0	2.03	ZZS2
20	6qn3_A_A20_U21	NAN	NANT	0	0.86	OP11
21	6qn3_A_U21_G22	OPN	OP21	9	0.53	OP21
22	6qn3_A_G22_A23	NAN	NANT	0	0.39	OP11
23	6qn3_A_A23_A24	NAN	NANT	0	0.73	BBS1
24	6qn3_A_A24_A25	SYN	AAS1	76	0.21	AAS1
25	6qn3_A_A25_U26	AAA	AA08	67	0.33	AA08
26	6qn3_A_U26_G27	AAA	AA08	58	0.25	AA08
27	6qn3_A_G27_G28	AAA	AA08	60	0.33	AA08
28	6qn3_A_G28_G29	AAA	AA08	29	0.32	AA08
29	6qn3_A_G29_A30	NAN	NANT	0	0.45	AA10
30	6qn3_A_A30_G31	AAA	AA04	52	0.44	AA04
31	6qn3_A_G31_U32	AAA	AA08	89	0.26	AA08
32	6qn3_A_U32_A33	NAN	NANT	0	0.38	AB04
33	6qn3_A_A33_G34	NAN	NANT	0	1.82	OP06
34	6qn3_A_G34_G35	NAN	NANT	0	1.82	OPS1
35	6qn3_A_G35_G36	NAN	NANT	0	0.58	ZZS2
36	6qn3_A_G36_A37	AAA	AA00	9	0.36	AA00
37	6qn3_A_A37_A38	AAA	AA08	78	0.21	AA08
38	6qn3_A_A38_C39	AAA	AA00	87	0.15	AA00
39	6qn3_A_C39_G40	AAA	AA00	67	0.20	AA00
40	6qn3_A_G40_G41	AAA	AA00	71	0.22	AA00
41	6qn3_A_G41_G42	AAA	AA00	79	0.23	AA00
42	6qn3_A_G42_A43	AAA	AA00	86	0.25	AA00
43	6qn3_A_A43_U44	AAA	AA00	71	0.23	AA00
44	6qn3_A_U44_U45	AAA	AA08	84	0.28	AA08
45	6qn3_A_U45_C46	AAA	AA08	79	0.17	AA08
46	6qn3_A_C46_U47	AAA	AA00	82	0.27	AA00
47	6qn3_A_U47_C48	NAN	NANT	0	0.49	AA10
48	6qn3_A_C48_A49	AAA	AA00	46	0.34	AA00
49	6qn3_A_A49_U50	AAA	AA00	76	0.20	AA00
50	6qn3_B_C1_G2	AAA	AA00	29	0.41	AA00
51	6qn3_B_G2_U3	AAA	AA00	75	0.18	AA00
52	6qn3_B_U3_U4	AAA	AA00	93	0.09	AA00
53	6qn3_B_U4_C5	AAw	AA06	71	0.31	AA06
54	6qn3_B_C5_A6	AAA	AA08	75	0.31	AA08
55	6qn3_B_A6_C7	AAA	AA08	73	0.19	AA08
56	6qn3_B_C7_C8	AAA	AA08	57	0.24	AA08
57	6qn3_B_C8_C9	AAA	AA00	76	0.14	AA00
58	6qn3_B_C9_U10	AAA	AA04	77	0.37	AA04
59	6qn3_B_U10_U11	OPN	OP09	87	0.14	OP09
60	6qn3_B_U11_C12	OPN	OP20	55	0.48	OP20
61	6qn3_B_C12_G13	NAN	NANT	0	0.30	ZZ1S
62	6qn3_B_G13_G14	NAN	NANT	0	0.76	AAS1
63	6qn3_B_G14_G15	AAA	AA00	73	0.16	AA00
64	6qn3_B_G15_G16	AAA	AA00	71	0.23	AA00
65	6qn3_B_G16_C17	AAA	AA00	44	0.29	AA00
66	6qn3_B_C17_G18	NAN	NANT	0	1.06	IC07
67	6qn3_B_G18_C19	NAN	NANT	0	0.91	OP08
68	6qn3_B_C19_A20	NAN	NANT	0	1.58	BBS1
69	6qn3_B_A20_U21	NAN	NANT	0	0.77	OP13
70	6qn3_B_U21_G22	NAN	NANT	0	2.28	OPS1
71	6qn3_B_G22_A23	OPN	OPS1	15	0.83	OPS1
72	6qn3_B_A23_A24	AAA	AA08	52	0.30	AA08
73	6qn3_B_A24_A25	AAA	AA00	76	0.30	AA00
74	6qn3_B_A25_U26	AAA	AA03	75	0.13	AA03
75	6qn3_B_U26_G27	AAw	AA01	55	0.30	AA01
76	6qn3_B_G27_G28	AAA	AA08	75	0.20	AA08
77	6qn3_B_G28_G29	AAA	AA08	78	0.19	AA08
78	6qn3_B_G29_A30	AAA	AA00	92	0.11	AA00
79	6qn3_B_A30_G31	AAA	AA00	69	0.20	AA00
80	6qn3_B_G31_U32	AAA	AA00	77	0.28	AA00
81	6qn3_B_U32_A33	AAA	AA00	55	0.31	AA00
82	6qn3_B_A33_G34	NAN	NANT	0	1.94	OP17
83	6qn3_B_G34_G35	NAN	NANT	0	1.94	OP11
84	6qn3_B_G35_G36	NAN	NANT	0	0.53	ZZS2
85	6qn3_B_G36_A37	AAu	AA12	25	0.44	AA12
86	6qn3_B_A37_A38	AAA	AA00	67	0.21	AA00
87	6qn3_B_A38_C39	AAA	AA00	83	0.13	AA00
88	6qn3_B_C39_G40	AAA	AA00	70	0.20	AA00
89	6qn3_B_G40_G41	AAA	AA00	55	0.29	AA00
90	6qn3_B_G41_G42	AAA	AA00	62	0.17	AA00
91	6qn3_B_G42_A43	AAA	AA00	64	0.27	AA00
92	6qn3_B_A43_U44	AAA	AA00	81	0.18	AA00
93	6qn3_B_U44_U45	AAA	AA08	76	0.33	AA08
94	6qn3_B_U45_C46	AAA	AA00	91	0.12	AA00
95	6qn3_B_C46_U47	AAA	AA00	82	0.20	AA00
96	6qn3_B_U47_C48	AAA	AA08	66	0.30	AA08
97	6qn3_B_C48_A49	AAA	AA00	90	0.16	AA00
98	6qn3_B_A49_U50	AAA	AA00	82	0.16	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 98 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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