Conformers:
ABBIImiBZICOPNSYNN
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The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide, carrying an Fe-S cluster
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6qib_P_DT1_DA2 | miB | BB10 | 24 | 0.39 |
| 02 | 6qib_P_DA2_DA3 | BBB | BB00 | 53 | 0.32 |
| 03 | 6qib_P_DA3_DC4 | B-A | BA10 | 89 | 0.34 |
| 04 | 6qib_P_DC4_DC5 | A-B | AB03 | 19 | 0.47 |
| 05 | 6qib_P_DC5_DG6 | BBw | BB17 | 25 | 0.40 |
| 06 | 6qib_P_DG6_DC7 | NAN | NANT | 0 | 0.48 |
| 07 | 6qib_P_DC7_DG8 | A-B | AB03 | 47 | 0.39 |
| 08 | 6qib_P_DG8_DT9 | B-A | BA13 | 56 | 0.35 |
| 09 | 6qib_P_DT9_DT10 | A-B | AB04 | 74 | 0.20 |
| 10 | 6qib_T_DT2_DC3 | NAN | NANT | 0 | 0.76 |
| 11 | 6qib_T_DC3_DT4 | NAN | NANT | 0 | 0.71 |
| 12 | 6qib_T_DT4_DT5 | NAN | NANT | 0 | 1.23 |
| 13 | 6qib_T_DT5_DG6 | AAA | AA00 | 43 | 0.23 |
| 14 | 6qib_T_DG6_DA7 | A-B | AB05 | 85 | 0.20 |
| 15 | 6qib_T_DA7_DA8 | BBB | BB00 | 56 | 0.26 |
| 16 | 6qib_T_DA8_DC9 | BBw | BB02 | 62 | 0.17 |
| 17 | 6qib_T_DC9_DG10 | BBB | BB00 | 54 | 0.35 |
| 18 | 6qib_T_DG10_DC11 | BBB | BB00 | 39 | 0.23 |
| 19 | 6qib_T_DC11_DG12 | miB | BB10 | 68 | 0.38 |
| 20 | 6qib_T_DG12_DG13 | B-A | BA01 | 54 | 0.28 |
| 21 | 6qib_T_DG13_DT14 | NAN | NANT | 0 | 0.46 |
| 22 | 6qib_T_DT14_DT15 | BBB | BB00 | 20 | 0.38 |
| 23 | 6qib_T_DT15_DA16 | NAN | NANT | 0 | 0.46 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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