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Conformers: ABBIImiBZICOPNSYNN
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58nt RNA L11-binding domain from E. coli 23S rRNA

Results of the assignment of 228 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016prv_A_GTP1051_C1052AAAAA08510.37 AA08
0026prv_A_C1052_C1053AAAAA00730.18 AA00
0036prv_A_C1053_A1054AAAAA00840.16 AA00
0046prv_A_A1054_G1055AAAAA00670.18 AA00
0056prv_A_G1055_G1056AAAAA04670.45 AA04
0066prv_A_G1056_A1057OPNOP01900.28 OP01
0076prv_A_A1057_U1058AAAAA00710.19 AA00
0086prv_A_U1058_G1059AAAAA00490.28 AA00
0096prv_A_G1059_U1060NANNANT00.37 ZZ01
0106prv_A_U1060_U1061OPNOP18920.14 OP18
0116prv_A_U1061_G1062OPNOP13380.48 OP13
0126prv_A_G1062_G1063AAAAA04730.34 AA04
0136prv_A_G1063_C1064AAwAA11260.50 AA11
0146prv_A_C1064_U1065AAAAA00450.48 AA00
0156prv_A_U1065_U1066AAAAA08680.47 AA08
0166prv_A_U1066_A1067OPNOP04220.23 OP04
0176prv_A_A1067_G1068AAAAA00420.40 AA00
0186prv_A_G1068_A1069A-BAB05270.43 AB05
0196prv_A_A1069_A1070NANNANT00.78 OP19
0206prv_A_A1070_G1071NANNANT01.22 OP05
0216prv_A_G1071_C1072AAAAA00730.23 AA00
0226prv_A_C1072_A1073NANNANT00.39 OP30
0236prv_A_A1073_G1074AAAAA08600.35 AA08
0246prv_A_G1074_C1075AAAAA00580.21 AA00
0256prv_A_C1075_C1076AAAAA00780.17 AA00
0266prv_A_C1076_A1077AAAAA00770.23 AA00
0276prv_A_A1077_U1078AAAAA00250.43 AA00
0286prv_A_U1078_C1079NANNANT01.47 OP24
0296prv_A_C1079_A1080AAAAA00760.21 AA00
0306prv_A_A1080_U1081AAAAA00610.15 AA00
0316prv_A_U1081_U1082AAAAA08850.16 AA08
0326prv_A_U1082_U1083AAAAA04660.39 AA04
0336prv_A_U1083_A1084OPNOP03370.39 OP03
0346prv_A_A1084_A1085AAAAA00580.31 AA00
0356prv_A_A1085_A1086NANNANT00.42 AB2S
0366prv_A_A1086_G1087NANNANT00.61 OP28
0376prv_A_G1087_A1088NANNANT01.69 OP20
0386prv_A_A1088_A1089NANNANT01.08 OP22
0396prv_A_A1089_A1090NANNANT00.72 OP26
0406prv_A_A1090_G1091AAwAA10330.26 AA10
0416prv_A_G1091_C1092AAAAA08600.21 AA08
0426prv_A_C1092_G1093AAAAA08440.47 AA08
0436prv_A_G1093_U1094AAAAA03590.26 AA03
0446prv_A_U1094_A1095OPNOP04920.19 OP04
0456prv_A_A1095_A1096AAAAA08830.28 AA08
0466prv_A_A1096_U1097AAwAA06140.55 AA06
0476prv_A_U1097_A1098NANNANT00.81 AA00
0486prv_A_A1098_G1099AAAAA08520.47 AA08
0496prv_A_G1099_C1100AAAAA00600.29 AA00
0506prv_A_C1100_U1101AAwAA01600.28 AA01
0516prv_A_U1101_C1102AAAAA08830.28 AA08
0526prv_A_C1102_A1103AAAAA00680.30 AA00
0536prv_A_A1103_C1104AAAAA08580.53 AA08
0546prv_A_C1104_U1105AAAAA00640.25 AA00
0556prv_A_U1105_G1106AAAAA00900.11 AA00
0566prv_A_G1106_G1107AAAAA00790.12 AA00
0576prv_A_G1107_U1108AAAAA08800.14 AA08
0586prv_B_GTP1051_C1052AAAAA03220.49 AA03
0596prv_B_C1052_C1053AAAAA00460.18 AA00
0606prv_B_C1053_A1054AAAAA00600.12 AA00
0616prv_B_A1054_G1055AAwAA01370.34 AA01
0626prv_B_G1055_G1056AAAAA08700.43 AA08
0636prv_B_G1056_A1057OPNOP01620.36 OP01
0646prv_B_A1057_U1058AAAAA08360.35 AA08
0656prv_B_U1058_G1059AAAAA08570.28 AA08
0666prv_B_G1059_U1060NANNANT00.40 ZZ01
0676prv_B_U1060_U1061OPNOP18730.21 OP18
0686prv_B_U1061_G1062OPNOP13420.39 OP13
0696prv_B_G1062_G1063AAAAA00330.32 AA00
0706prv_B_G1063_C1064AAAAA00710.25 AA00
0716prv_B_C1064_U1065AAAAA00500.38 AA00
0726prv_B_U1065_U1066AAAAA08580.40 AA08
0736prv_B_U1066_A1067OPNOP04880.15 OP04
0746prv_B_A1067_G1068AAAAA00660.32 AA00
0756prv_B_G1068_A1069A-BAB05320.47 AB05
0766prv_B_A1069_A1070NANNANT00.83 OP19
0776prv_B_A1070_G1071NANNANT01.16 OP05
0786prv_B_G1071_C1072AAAAA08850.29 AA08
0796prv_B_C1072_A1073NANNANT00.36 OP30
0806prv_B_A1073_G1074AAAAA00490.32 AA00
0816prv_B_G1074_C1075AAAAA00520.32 AA00
0826prv_B_C1075_C1076AAAAA00320.37 AA00
0836prv_B_C1076_A1077AAAAA04820.18 AA04
0846prv_B_A1077_U1078AAAAA08740.44 AA08
0856prv_B_U1078_C1079NANNANT01.67 OP24
0866prv_B_C1079_A1080AAAAA08800.16 AA08
0876prv_B_A1080_U1081AAAAA00650.26 AA00
0886prv_B_U1081_U1082AAAAA08710.24 AA08
0896prv_B_U1082_U1083AAwAA10280.47 AA10
0906prv_B_U1083_A1084OPNOP03550.35 OP03
0916prv_B_A1084_A1085AAAAA08710.24 AA08
0926prv_B_A1085_A1086NANNANT00.39 AB2S
0936prv_B_A1086_G1087NANNANT00.62 OP28
0946prv_B_G1087_A1088NANNANT00.89 OP17
0956prv_B_A1088_A1089NANNANT02.31 ZZS2
0966prv_B_A1089_A1090NANNANT00.67 OP26
0976prv_B_A1090_G1091AAAAA00520.27 AA00
0986prv_B_G1091_C1092AAAAA00680.20 AA00
0996prv_B_C1092_G1093AAAAA04660.51 AA04
1006prv_B_G1093_U1094AAAAA03730.29 AA03
1016prv_B_U1094_A1095OPNOP04340.24 OP04
1026prv_B_A1095_A1096AAAAA08900.31 AA08
1036prv_B_A1096_U1097NANNANT00.52 AA06
1046prv_B_U1097_A1098NANNANT00.80 AA04
1056prv_B_A1098_G1099AAAAA00180.53 AA00
1066prv_B_G1099_C1100AAAAA00700.26 AA00
1076prv_B_C1100_U1101AAwAA01730.14 AA01
1086prv_B_U1101_C1102AAAAA08880.28 AA08
1096prv_B_C1102_A1103AAAAA00710.30 AA00
1106prv_B_A1103_C1104AAAAA08440.53 AA08
1116prv_B_C1104_U1105AAAAA00750.20 AA00
1126prv_B_U1105_G1106AAAAA08890.26 AA08
1136prv_B_G1106_G1107AAAAA00400.12 AA00
1146prv_B_G1107_U1108AAAAA00840.16 AA00
1156prv_C_GTP1051_C1052AAAAA08760.18 AA08
1166prv_C_C1052_C1053AAAAA00470.28 AA00
1176prv_C_C1053_A1054AAAAA00600.20 AA00
1186prv_C_A1054_G1055AAAAA08850.12 AA08
1196prv_C_G1055_G1056AAAAA00160.38 AA00
1206prv_C_G1056_A1057OPNOP01420.32 OP01
1216prv_C_A1057_U1058AAAAA08120.43 AA08
1226prv_C_U1058_G1059AAAAA00570.24 AA00
1236prv_C_G1059_U1060NANNANT00.37 ZZ01
1246prv_C_U1060_U1061OPNOP18830.12 OP18
1256prv_C_U1061_G1062OPNOP13400.35 OP13
1266prv_C_G1062_G1063AAAAA00260.37 AA00
1276prv_C_G1063_C1064AAAAA04550.33 AA04
1286prv_C_C1064_U1065AAAAA08760.37 AA08
1296prv_C_U1065_U1066AAAAA08830.32 AA08
1306prv_C_U1066_A1067OPNOP04780.17 OP04
1316prv_C_A1067_G1068AAAAA08610.29 AA08
1326prv_C_G1068_A1069NANNANT00.62 AB04
1336prv_C_A1069_A1070NANNANT01.88 IC07
1346prv_C_A1070_G1071NANNANT01.22 OP05
1356prv_C_G1071_C1072AAAAA08220.29 AA08
1366prv_C_C1072_A1073NANNANT00.39 OP30
1376prv_C_A1073_G1074AAAAA00580.41 AA00
1386prv_C_G1074_C1075AAAAA00530.17 AA00
1396prv_C_C1075_C1076AAAAA08910.11 AA08
1406prv_C_C1076_A1077AAAAA08880.14 AA08
1416prv_C_A1077_U1078AAAAA00570.39 AA00
1426prv_C_U1078_C1079NANNANT01.51 OP24
1436prv_C_C1079_A1080AAAAA08890.20 AA08
1446prv_C_A1080_U1081AAAAA00740.26 AA00
1456prv_C_U1081_U1082AAAAA08840.14 AA08
1466prv_C_U1082_U1083AAwAA10210.44 AA10
1476prv_C_U1083_A1084OPNOP03640.32 OP03
1486prv_C_A1084_A1085AAAAA08860.20 AA08
1496prv_C_A1085_A1086NANNANT00.42 AB2S
1506prv_C_A1086_G1087NANNANT00.56 OP28
1516prv_C_G1087_A1088NANNANT00.93 OP17
1526prv_C_A1088_A1089NANNANT01.57 OP16
1536prv_C_A1089_A1090NANNANT00.60 OP26
1546prv_C_A1090_G1091AAAAA08330.33 AA08
1556prv_C_G1091_C1092AAAAA08500.27 AA08
1566prv_C_C1092_G1093AAAAA00270.44 AA00
1576prv_C_G1093_U1094AAAAA00350.42 AA00
1586prv_C_U1094_A1095OPNOP04330.23 OP04
1596prv_C_A1095_A1096AAAAA08830.23 AA08
1606prv_C_A1096_U1097AAwAA01500.23 AA01
1616prv_C_U1097_A1098AAAAA08180.72 AA08
1626prv_C_A1098_G1099AAAAA08280.47 AA08
1636prv_C_G1099_C1100AAAAA00600.27 AA00
1646prv_C_C1100_U1101AAwAA01610.21 AA01
1656prv_C_U1101_C1102AAAAA00430.43 AA00
1666prv_C_C1102_A1103AAAAA00720.28 AA00
1676prv_C_A1103_C1104AAAAA08570.49 AA08
1686prv_C_C1104_U1105AAAAA00660.24 AA00
1696prv_C_U1105_G1106AAAAA00920.11 AA00
1706prv_C_G1106_G1107AAAAA00890.19 AA00
1716prv_C_G1107_U1108AAAAA04800.29 AA04
1726prv_D_GTP1051_C1052AAAAA08480.33 AA08
1736prv_D_C1052_C1053AAAAA00770.23 AA00
1746prv_D_C1053_A1054AAAAA00700.15 AA00
1756prv_D_A1054_G1055AAAAA08950.19 AA08
1766prv_D_G1055_G1056AAAAA00250.39 AA00
1776prv_D_G1056_A1057OPNOP01850.28 OP01
1786prv_D_A1057_U1058AAAAA08130.39 AA08
1796prv_D_U1058_G1059AAuAA12440.38 AA12
1806prv_D_G1059_U1060NANNANT00.35 ZZ01
1816prv_D_U1060_U1061NANNANT00.46 OP18
1826prv_D_U1061_G1062OPNOP13210.62 OP13
1836prv_D_G1062_G1063AAAAA04300.52 AA04
1846prv_D_G1063_C1064NANNANT00.72 AA11
1856prv_D_C1064_U1065NANNANT00.66 AA10
1866prv_D_U1065_U1066AAAAA08790.39 AA08
1876prv_D_U1066_A1067OPNOP03880.23 OP03
1886prv_D_A1067_G1068AAAAA08870.22 AA08
1896prv_D_G1068_A1069NANNANT00.46 AA09
1906prv_D_A1069_A1070NANNANT02.54 IC04
1916prv_D_A1070_G1071NANNANT01.26 OP05
1926prv_D_G1071_C1072AAAAA08740.35 AA08
1936prv_D_C1072_A1073NANNANT00.36 OP30
1946prv_D_A1073_G1074AAAAA00310.45 AA00
1956prv_D_G1074_C1075AAAAA03640.39 AA03
1966prv_D_C1075_C1076AAAAA08900.26 AA08
1976prv_D_C1076_A1077AAAAA08770.25 AA08
1986prv_D_A1077_U1078AAAAA08530.47 AA08
1996prv_D_U1078_C1079NANNANT01.31 OP27
2006prv_D_C1079_A1080AAAAA08830.38 AA08
2016prv_D_A1080_U1081AAAAA08590.39 AA08
2026prv_D_U1081_U1082AAAAA03600.28 AA03
2036prv_D_U1082_U1083AAAAA08480.52 AA08
2046prv_D_U1083_A1084NANNANT00.46 OP03
2056prv_D_A1084_A1085AAAAA00840.20 AA00
2066prv_D_A1085_A1086NANNANT00.39 AB2S
2076prv_D_A1086_G1087NANNANT00.81 OP28
2086prv_D_G1087_A1088NANNANT01.63 OP20
2096prv_D_A1088_A1089NANNANT02.19 ZZS2
2106prv_D_A1089_A1090NANNANT00.60 OP26
2116prv_D_A1090_G1091AAAAA00630.25 AA00
2126prv_D_G1091_C1092AAAAA00480.41 AA00
2136prv_D_C1092_G1093AAAAA00380.46 AA00
2146prv_D_G1093_U1094AAAAA00130.47 AA00
2156prv_D_U1094_A1095OPNOP03150.44 OP03
2166prv_D_A1095_A1096AAAAA08820.25 AA08
2176prv_D_A1096_U1097NANNANT00.57 AA06
2186prv_D_U1097_A1098NANNANT00.76 AA10
2196prv_D_A1098_G1099AAAAA08100.55 AA08
2206prv_D_G1099_C1100AAAAA00430.33 AA00
2216prv_D_C1100_U1101AAwAA06120.59 AA06
2226prv_D_U1101_C1102AAAAA00330.52 AA00
2236prv_D_C1102_A1103AAAAA00680.20 AA00
2246prv_D_A1103_C1104NANNANT00.74 AA04
2256prv_D_C1104_U1105AAAAA04160.61 AA04
2266prv_D_U1105_G1106AAAAA00850.18 AA00
2276prv_D_G1106_G1107AAAAA00770.13 AA00
2286prv_D_G1107_U1108AAAAA08660.28 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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