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Conformers: ABBIImiBZICOPNSYNN
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Structure of human DNA polymerase beta N279A complexed with 8OA in the template base paired with incoming non-hydrolyzable GTP

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016pkz_T_DC1_DC2miBBB15250.39 BB15
026pkz_T_DC2_DG3B12BB04570.18 BB04
036pkz_T_DG3_DA4BBBBB00450.26 BB00
046pkz_T_DA4_DC5BBBBB00680.27 BB00
056pkz_T_DT7_DC8BBBBB00470.35 BB00
066pkz_T_DC8_DG9BBBBB00570.49 BB00
076pkz_T_DG9_DC10BBBBB00790.18 BB00
086pkz_T_DC10_DA11BBBBB00490.31 BB00
096pkz_T_DA11_DT12BBBBB00780.20 BB00
106pkz_T_DT12_DC13BBBBB00770.24 BB00
116pkz_T_DC13_DA14BBBBB00550.19 BB00
126pkz_T_DA14_DG15BBBBB00760.19 BB00
136pkz_T_DG15_DC16miBBB10420.41 BB10
146pkz_P_DG1_DC2A-BAB01480.29 AB01
156pkz_P_DC2_DT3BBBBB00810.19 BB00
166pkz_P_DT3_DG4BBBBB00150.15 BB00
176pkz_P_DG4_DA5BBBBB00190.35 BB00
186pkz_P_DA5_DT6BBBBB00700.18 BB00
196pkz_P_DT6_DG7BBBBB00810.18 BB00
206pkz_P_DG7_DC8B-ABA05900.10 BA05
216pkz_P_DC8_DG9A-BAB03740.26 AB03
226pkz_P_DG9_DA10BBBBB00840.15 BB00
236pkz_D_DG1_DT2BBBBB01880.17 BB01
246pkz_D_DT2_DC3BBBBB01700.16 BB01
256pkz_D_DC3_DG4BBBBB00750.24 BB00
266pkz_D_DG4_DG5BB2BB07840.27 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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