DNATCO v4.1: results

Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6p2h_A_GTP17_G18	AAA	AA08	56	0.27	AA08
02	6p2h_A_G18_G19	AAA	AA00	59	0.19	AA00
03	6p2h_A_G19_U20	AAA	AA00	79	0.16	AA00
04	6p2h_A_U20_G21	AAA	AA00	89	0.17	AA00
05	6p2h_A_G21_U22	NAN	NANT	0	0.69	OP04
06	6p2h_A_U22_A23	NAN	NANT	0	1.18	OP26
07	6p2h_A_A23_A24	NAN	NANT	0	0.96	OP17
08	6p2h_A_A24_U25	OPN	OP02	27	0.45	OP02
09	6p2h_A_U25_C26	AAA	AA00	86	0.15	AA00
10	6p2h_A_C26_U27	AAA	AA00	86	0.21	AA00
11	6p2h_A_U27_C28	AAA	AA00	71	0.17	AA00
12	6p2h_A_C28_C29	AAA	AA00	92	0.12	AA00
13	6p2h_A_C29_A30	AAA	AA00	93	0.10	AA00
14	6p2h_A_A30_A31	AAA	AA08	65	0.22	AA08
15	6p2h_A_A31_A32	AAA	AA00	76	0.22	AA00
16	6p2h_A_A32_A33	AAA	AA00	61	0.15	AA00
17	6p2h_A_A33_U34	A-B	AB05	88	0.22	AB05
18	6p2h_A_U34_A35	NAN	NANT	0	1.14	OP22
19	6p2h_A_A35_U36	NAN	NANT	0	0.72	OP21
20	6p2h_A_U36_G37	OPN	OPS1	56	0.54	OPS1
21	6p2h_A_G37_G38	AAA	AA00	71	0.21	AA00
22	6p2h_A_G38_U39	OPN	OP01	89	0.28	OP01
23	6p2h_A_U39_U40	AAA	AA00	97	0.11	AA00
24	6p2h_A_U40_G41	AAA	AA00	91	0.13	AA00
25	6p2h_A_G41_G42	AAA	AA00	91	0.12	AA00
26	6p2h_A_G42_G43	AAA	AA00	74	0.17	AA00
27	6p2h_A_G43_G44	AAA	AA00	77	0.18	AA00
28	6p2h_A_G44_A45	AAA	AA00	80	0.17	AA00
29	6p2h_A_A45_G46	AAA	AA00	47	0.37	AA00
30	6p2h_A_G46_C47	NAN	NANT	0	0.90	OP06
31	6p2h_A_C47_C48	AAA	AA00	89	0.15	AA00
32	6p2h_A_C48_U49	ZZZ	ZZ01	90	0.11	ZZ01
33	6p2h_A_U49_C50	NAN	NANT	0	0.53	OP22
34	6p2h_A_C50_C51	AAA	AA00	60	0.32	AA00
35	6p2h_A_C51_A52	AAA	AA00	77	0.30	AA00
36	6p2h_A_A52_C53	NAN	NANT	0	0.31	AB2S
37	6p2h_A_C53_C54	NAN	NANT	0	0.50	OP01
38	6p2h_A_C54_A55	AAA	AA00	90	0.14	AA00
39	6p2h_A_A55_G56	AAA	AA00	66	0.18	AA00
40	6p2h_A_G56_U57	AAw	AA06	87	0.22	AA06
41	6p2h_A_U57_G58	AAA	AA08	20	0.37	AA08
42	6p2h_A_G58_A59	AAA	AA00	81	0.13	AA00
43	6p2h_A_A59_A60	AAA	AA08	87	0.21	AA08
44	6p2h_A_A60_C61	AAA	AA08	85	0.21	AA08
45	6p2h_A_C61_C62	AAA	AA08	79	0.22	AA08
46	6p2h_A_C62_G63	NAN	NANT	0	0.64	IC04
47	6p2h_A_G63_U64	OPN	OP22	20	0.38	OP22
48	6p2h_A_U64_A65	NAN	NANT	0	0.59	ZZ02
49	6p2h_A_A65_A66	NAN	NANT	0	0.47	AB01
50	6p2h_A_A66_A67	B-A	BA13	36	0.39	BA13
51	6p2h_A_A67_A68	NAN	NANT	0	0.76	AA10
52	6p2h_A_A68_U69	NAN	NANT	0	0.79	AA10
53	6p2h_A_U69_C70	AAA	AA08	80	0.26	AA08
54	6p2h_A_C70_G71	NAN	NANT	0	0.38	AA10
55	6p2h_A_G71_C72	AAA	AA08	80	0.19	AA08
56	6p2h_A_C72_U73	AAA	AA00	94	0.15	AA00
57	6p2h_A_U73_G74	AAA	AA00	86	0.13	AA00
58	6p2h_A_G74_U75	NAN	NANT	0	0.44	ZZ01
59	6p2h_A_U75_C76	OPN	OP18	71	0.15	OP18
60	6p2h_A_C76_A77	OPN	OP13	75	0.18	OP13
61	6p2h_A_A77_C78	AAA	AA08	32	0.48	AA08
62	6p2h_A_C78_C79	AAA	AA00	88	0.23	AA00
63	6p2h_A_C79_A80	AAA	AA08	73	0.26	AA08
64	6p2h_A_A80_C81	AAA	AA08	90	0.15	AA08
65	6p2h_A_C81_C82	AAA	AA00	95	0.14	AA00
66	6p2h_A_C82_C83	AAA	AA00	89	0.17	AA00
67	6p2h_A_C83_A84	AAA	AA00	85	0.20	AA00
68	6p2h_A_A84_G85	AAA	AA00	75	0.19	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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