Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing undamaged template dG and bound incoming dCMPNPP

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016p1v_T_DC1_DG2A-BAB01470.19 AB01
026p1v_T_DG2_DG3BBBBB00320.23 BB00
036p1v_T_DG3_DC4BBBBB00450.25 BB00
046p1v_T_DC4_DG5NANNANT01.12 OP21
056p1v_T_DG5_DT6BBBBB00610.29 BB00
066p1v_T_DT6_DA7B-ABA13570.35 BA13
076p1v_T_DA7_DC8A-BAB05850.21 AB05
086p1v_T_DC8_DG9BBBBB00110.47 BB00
096p1v_P_DC1_DG2AAAAA00910.17 AA00
106p1v_P_DG2_DT3AAAAA00760.24 AA00
116p1v_P_DT3_DA4AAAAA00490.25 AA00
126p1v_D_DG1_DC2B-ABA05220.38 BA05
136p1v_D_DC2_DC3A-BAB01700.27 AB01
146p1v_D_DC3_DG4BBBBB00640.24 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N