Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6oy6_G_DC3_DC4 | miB | BB10 | 37 | 0.41 |
| 02 | 6oy6_G_DC4_DT5 | A-B | AB01 | 14 | 0.40 |
| 03 | 6oy6_G_DT5_DG6 | NAN | NANT | 0 | 0.72 |
| 04 | 6oy6_G_DG6_DC7 | NAN | NANT | 0 | 0.61 |
| 05 | 6oy6_G_DC7_DA8 | B12 | BB04 | 89 | 0.20 |
| 06 | 6oy6_G_DA8_DT9 | miB | BB10 | 74 | 0.16 |
| 07 | 6oy6_G_DT9_DC10 | BBB | BB00 | 74 | 0.24 |
| 08 | 6oy6_G_DC10_DA11 | NAN | NANT | 0 | 0.29 |
| 09 | 6oy6_G_DA11_DG12 | NAN | NANT | 0 | 0.43 |
| 10 | 6oy6_G_DG12_DA13 | AAA | AA04 | 53 | 0.30 |
| 11 | 6oy6_G_DA13_DG14 | NAN | NANT | 0 | 0.88 |
| 12 | 6oy6_G_DG14_DC15 | AAA | AA00 | 49 | 0.33 |
| 13 | 6oy6_G_DC15_DC16 | AAA | AA00 | 84 | 0.21 |
| 14 | 6oy6_G_DC16_DC17 | AAA | AA04 | 93 | 0.30 |
| 15 | 6oy6_G_DC17_DA18 | AAw | AA10 | 24 | 0.45 |
| 16 | 6oy6_G_DA18_DA19 | NAN | NANT | 0 | 1.10 |
| 17 | 6oy6_G_DA19_DA20 | NAN | NANT | 0 | 2.64 |
| 18 | 6oy6_G_DA20_DA21 | NAN | NANT | 0 | 1.25 |
| 19 | 6oy6_H_DT1_DA2 | NAN | NANT | 0 | 1.01 |
| 20 | 6oy6_H_DA2_DT3 | NAN | NANT | 0 | 0.94 |
| 21 | 6oy6_H_DT3_DA4 | BBw | BB16 | 37 | 0.31 |
| 22 | 6oy6_H_DA4_DA5 | BBB | BB00 | 80 | 0.21 |
| 23 | 6oy6_H_DA5_DT6 | NAN | NANT | 0 | 0.57 |
| 24 | 6oy6_H_DT6_DG7 | NAN | NANT | 0 | 1.57 |
| 25 | 6oy6_H_DG7_DG8 | NAN | NANT | 0 | 1.15 |
| 26 | 6oy6_H_DG8_DG9 | NAN | NANT | 0 | 0.60 |
| 27 | 6oy6_H_DG9_DA10 | miB | BB10 | 20 | 0.57 |
| 28 | 6oy6_H_DA10_DG11 | NAN | NANT | 0 | 1.15 |
| 29 | 6oy6_H_DT15_DC16 | NAN | NANT | 0 | 0.75 |
| 30 | 6oy6_H_DC16_DT17 | NAN | NANT | 0 | 0.45 |
| 31 | 6oy6_H_DT17_DG18 | A-B | AB01 | 87 | 0.17 |
| 32 | 6oy6_H_DG18_DA19 | BBB | BB00 | 70 | 0.26 |
| 33 | 6oy6_H_DA19_DT20 | BBB | BB00 | 54 | 0.23 |
| 34 | 6oy6_H_DT20_DG21 | B12 | BB04 | 39 | 0.23 |
| 35 | 6oy6_H_DG21_DC22 | B-A | BA01 | 23 | 0.34 |
| 36 | 6oy6_H_DC22_DA23 | NAN | NANT | 0 | 0.67 |
| 37 | 6oy6_H_DA23_DG24 | BBB | BB00 | 21 | 0.38 |
| 38 | 6oy6_H_DG24_DG25 | B12 | BB04 | 16 | 0.52 |
| 39 | 6oy6_I_GTP5_G6 | NAN | NANT | 0 | 0.65 |
| 40 | 6oy6_I_G6_G7 | AAu | AA12 | 56 | 0.43 |
| 41 | 6oy6_I_G7_G8 | AAA | AA00 | 82 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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