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Conformers: ABBIImiBZICOPNSYNN
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Casposase bound to integration product

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016opm_E_DA2_DT3NANNANT01.22 OP27
026opm_E_DT3_DA4NANNANT00.60 BB03
036opm_E_DA4_DT5NANNANT00.34 IC06
046opm_E_DT5_DC6NANNANT00.38 OP20
056opm_E_DC6_DC7NANNANT02.03 OP06
066opm_E_DC7_DC8SYNBBS1810.26 BBS1
076opm_E_DC8_DC9NANNANT01.21 OP27
086opm_E_DC9_DG10A-BAB05250.32 AB05
096opm_E_DG10_DC11BBBBB00210.24 BB00
106opm_E_DC11_DA12A-BAB03250.32 AB03
116opm_E_DA12_DC13B-ABA09680.20 BA09
126opm_E_DC13_DT14A-BAB05190.23 AB05
136opm_E_DT14_DT15BBBBB01920.16 BB01
146opm_E_DT15_DA16BBBBB00430.27 BB00
156opm_E_DA16_DA17B12BB05460.19 BB05
166opm_E_DA17_DG18NANNANT00.40 BB03
176opm_E_DG18_DT19BBwBB16680.60 BB16
186opm_E_DT19_DG20BB2BB07130.55 BB07
196opm_E_DG20_DC21B-ABA09520.23 BA09
206opm_E_DC21_DG22A-BAB05750.26 AB05
216opm_F_DA2_DT3NANNANT01.30 AB1S
226opm_F_DT3_DA4NANNANT00.82 AA11
236opm_F_DA4_DT5NANNANT00.41 IC06
246opm_F_DT5_DC6NANNANT00.41 OP20
256opm_F_DC6_DC7NANNANT02.02 OP06
266opm_F_DC7_DC8SYNBBS1860.24 BBS1
276opm_F_DC8_DC9NANNANT01.20 OP27
286opm_F_DC9_DG10A-BAB04540.32 AB04
296opm_F_DG10_DC11BBBBB00790.17 BB00
306opm_F_DC11_DA12BBBBB00400.35 BB00
316opm_F_DA12_DC13B-ABA09700.16 BA09
326opm_F_DC13_DT14A-BAB04590.28 AB04
336opm_F_DT14_DT15BBBBB01750.16 BB01
346opm_F_DT15_DA16BBBBB00800.18 BB00
356opm_F_DA16_DA17BBBBB00460.27 BB00
366opm_F_DA17_DG18BBBBB00500.23 BB00
376opm_F_DG18_DT19miBBB10590.40 BB10
386opm_F_DT19_DG20BB2BB07350.48 BB07
396opm_F_DG20_DC21B-ABA09800.18 BA09
406opm_F_DC21_DG22AAAAA09170.24 AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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