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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of an adenovirus virus-associated RNA

Results of the assignment of 105 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016ol3_C_G26_G27AAAAA08580.22 AA08
0026ol3_C_G27_A28AAAAA00940.07 AA00
0036ol3_C_A28_C29AAAAA08780.15 AA08
0046ol3_C_C29_C30AAAAA00800.19 AA00
0056ol3_C_C30_U31AAAAA00800.15 AA00
0066ol3_C_U31_C32AAAAA00910.15 AA00
0076ol3_C_C32_G33AAAAA00780.13 AA00
0086ol3_C_G33_C34AAAAA00920.14 AA00
0096ol3_C_C34_A35AAAAA00870.24 AA00
0106ol3_C_A35_A36AAAAA08860.22 AA08
0116ol3_C_A36_G37NANNANT01.06 OP29
0126ol3_C_G37_G38AAAAA00650.22 AA00
0136ol3_C_G38_G39AAAAA00760.15 AA00
0146ol3_C_G39_U40AAwAA01740.18 AA01
0156ol3_C_U40_A41AAAAA08810.17 AA08
0166ol3_C_A41_U42AAAAA08850.16 AA08
0176ol3_C_U42_C43AAAAA00870.12 AA00
0186ol3_C_C43_A44AAAAA00870.12 AA00
0196ol3_C_A44_U45AAAAA00760.18 AA00
0206ol3_C_U45_G46AAuAA12700.23 AA12
0216ol3_C_G46_G47AAAAA00940.11 AA00
0226ol3_C_G47_C48AAAAA00890.12 AA00
0236ol3_C_C48_G49AAAAA00900.10 AA00
0246ol3_C_G49_G50AAAAA00810.18 AA00
0256ol3_C_G50_A51AAwAA01450.28 AA01
0266ol3_C_A51_C52AAAAA08770.23 AA08
0276ol3_C_C52_G53AAAAA00830.12 AA00
0286ol3_C_G53_A54AAAAA00780.16 AA00
0296ol3_C_A54_C55AAAAA00710.14 AA00
0306ol3_C_C55_C56AAwAA01590.24 AA01
0316ol3_C_C56_G57AAAAA08760.27 AA08
0326ol3_C_G57_G58AAwAA10120.42 AA10
0336ol3_C_G58_G59A-BAB05460.43 AB05
0346ol3_C_U61_U62AAAAA00940.16 AA00
0356ol3_C_U62_C63AAAAA00840.17 AA00
0366ol3_C_C63_G64AAwAA01810.16 AA01
0376ol3_C_G64_A65NANNANT00.52 OP05
0386ol3_C_A65_A66NANNANT00.70 IC06
0396ol3_C_A66_C67NANNANT00.78 OP26
0406ol3_C_C67_C68AAAAA08140.50 AA08
0416ol3_C_C68_C69AAAAA00630.34 AA00
0426ol3_C_C69_C70AAAAA00430.24 AA00
0436ol3_C_C70_G71AAAAA00850.12 AA00
0446ol3_C_G71_G72AAAAA00630.24 AA00
0456ol3_C_G72_A73AAAAA00920.15 AA00
0466ol3_C_A73_U74AAAAA00800.22 AA00
0476ol3_C_U74_C75AAAAA00880.16 AA00
0486ol3_C_C75_C76AAwAA01690.21 AA01
0496ol3_C_C76_G77AAAAA08670.21 AA08
0506ol3_C_G77_G78AAAAA00830.14 AA00
0516ol3_C_G78_C79AAAAA00900.14 AA00
0526ol3_C_C79_C80AAAAA00760.23 AA00
0536ol3_C_C80_G81AAAAA00840.13 AA00
0546ol3_C_G81_U82AAAAA00490.29 AA00
0556ol3_C_U82_C83NANNANT00.76 AA05
0566ol3_C_C83_C84AAAAA08720.17 AA08
0576ol3_C_C84_G85AAAAA00710.11 AA00
0586ol3_C_G85_C86AAAAA00790.15 AA00
0596ol3_C_C86_C87AAAAA00730.21 AA00
0606ol3_C_C87_G88AAwAA10680.22 AA10
0616ol3_C_G88_U89AAAAA08680.21 AA08
0626ol3_C_U89_G90AAAAA00820.10 AA00
0636ol3_C_G90_A91AAAAA00750.09 AA00
0646ol3_C_A91_U92AAAAA08540.17 AA08
0656ol3_C_U92_C93AAAAA08420.41 AA08
0666ol3_C_C93_C94NANNANT01.53 OP05
0676ol3_C_C94_A95AAAAA00960.09 AA00
0686ol3_C_A95_U96AAAAA00810.23 AA00
0696ol3_C_U96_G97AAAAA00520.30 AA00
0706ol3_C_G97_C98AAAAA00910.09 AA00
0716ol3_C_C98_G99AAAAA00890.12 AA00
0726ol3_C_G99_G100AAAAA00840.19 AA00
0736ol3_C_G100_U101AAAAA00740.27 AA00
0746ol3_C_A103_C104AAAAA00470.26 AA00
0756ol3_C_C104_C105AAAAA00800.17 AA00
0766ol3_C_C105_G106NANNANT00.48 AA06
0776ol3_C_G106_C107AAAAA08700.31 AA08
0786ol3_C_C107_C108AAAAA00660.34 AA00
0796ol3_C_C108_C109AAAAA00550.21 AA00
0806ol3_C_C109_G110AAAAA00870.14 AA00
0816ol3_C_G110_C111AAAAA00730.09 AA00
0826ol3_C_C111_G112AAwAA01740.26 AA01
0836ol3_C_G112_U113AAAAA08660.24 AA08
0846ol3_C_U113_G114AAAAA00910.15 AA00
0856ol3_C_C116_G117A-BAB05930.22 AB05
0866ol3_C_G117_A118NANNANT00.92 ZZ2S
0876ol3_C_A118_A119NANNANT01.25 OP13
0886ol3_C_A119_C120AAAAA00440.29 AA00
0896ol3_C_C120_C121AAAAA00900.15 AA00
0906ol3_C_C121_C122AAAAA00830.17 AA00
0916ol3_C_C122_A123A-BAB05840.27 AB05
0926ol3_C_A123_G124OPNOP24830.32 OP24
0936ol3_C_G124_G125AAAAA00730.23 AA00
0946ol3_C_G125_U126AAAAA00810.24 AA00
0956ol3_C_U126_G127NANNANT00.95 BB2S
0966ol3_C_G127_U128NANNANT01.58 OPS1
0976ol3_C_U128_G129AAAAA00840.15 AA00
0986ol3_C_G129_C130AAAAA00810.14 AA00
0996ol3_C_C130_G131AAAAA00910.13 AA00
1006ol3_C_G131_A132AAAAA00840.09 AA00
1016ol3_C_A132_G133AAAAA00870.11 AA00
1026ol3_C_G133_G134AAwAA01810.18 AA01
1036ol3_C_G134_U135AAwAA11620.37 AA11
1046ol3_C_U135_C136AAAAA08830.25 AA08
1056ol3_C_C136_C137AAAAA00930.12 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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