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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MeCP2 MBD in complex with DNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016ogk_D_DG1_DC2BBBBB00610.32 BB00
026ogk_D_DC2_DC3B12BB04590.24 BB04
036ogk_D_DC3_DT4B-ABA05450.23 BA05
046ogk_D_DT4_DA5A-BAB01220.36 AB01
056ogk_D_DA5_5CM6miBBB12920.21 BB12
066ogk_D_5CM6_DA7BBBBB00160.49 BB00
076ogk_D_DA7_DC8B-ABA05630.26 BA05
086ogk_D_DC8_DT9A-BAB03650.42 AB03
096ogk_D_DT9_DC10BBBBB00680.33 BB00
106ogk_D_DC10_DC11BB2BB07790.23 BB07
116ogk_D_DC11_DG12BB2BB07640.27 BB07
126ogk_C_DC.A1_DG2BB2BB07680.27 BB07
136ogk_C_DG2_DG3BB2BB07720.19 BB07
146ogk_C_DG3_DA4BB2BB07480.25 BB07
156ogk_C_DA4_DG.A5B-ABA05600.20 BA05
166ogk_C_DA4_DG.B5B-ABA10850.16 BA10
176ogk_C_DG.A5_DT6BBBBB00370.46 BB00
186ogk_C_DG.B5_DT6A-BAB03660.34 AB03
196ogk_C_DT6_DG7BBBBB00690.32 BB00
206ogk_C_DG7_DT8BBBBB00860.20 BB00
216ogk_C_DT8_DA9BB2BB07750.23 BB07
226ogk_C_DA9_DG10BBBBB00750.17 BB00
236ogk_C_DG10_DG11BBBBB00510.28 BB00
246ogk_C_DG11_DC12BBBBB01630.28 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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