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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of HMCES SRAP domain in complex with longer 3' overhang DNA

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016oea_B_DC1_DC2A-BAB05800.20 AB05
026oea_B_DC2_DA3BBBBB00690.23 BB00
036oea_B_DA3_DG4BBBBB00600.21 BB00
046oea_B_DG4_DA5BBBBB00680.39 BB00
056oea_B_DA5_DC6BBBBB00790.32 BB00
066oea_B_DC6_DG7NANNANT00.81 OP11
076oea_B_DG7_DT8NANNANT00.90 AB04
086oea_B_DT8_DT9AAAAA02510.41 AA02
096oea_B_DT9_DG10AAAAA02200.32 AA02
106oea_C_DG1_DT2BBBBB00890.14 BB00
116oea_C_DT2_DC3B-ABA08860.29 BA08
126oea_C_DC3_DT4A-BAB01140.23 AB01
136oea_C_DT4_DG5BBBBB00900.11 BB00
146oea_C_DG5_DG6BBBBB00700.15 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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