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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide Containing E-box Sequence

Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016od3_X_DC1_DA2OPNOP22440.66 OP22
026od3_X_DA2_DT3BBBBB01860.11 BB01
036od3_X_DT3_DA4BBBBB01690.25 BB01
046od3_X_DA4_DC5B-ABA05760.29 BA05
056od3_X_DC5_DA6BBBBB00550.35 BB00
066od3_X_DA6_DC7BBBBB00820.28 BB00
076od3_X_DC7_DG8BBBBB00620.38 BB00
086od3_X_DG8_DT9BBBBB00780.24 BB00
096od3_X_DT9_DG10B12BB04700.19 BB04
106od3_X_DG10_DT11BBBBB00790.20 BB00
116od3_X_DT11_DA12BBBBB01720.21 BB01
126od3_X_DA12_DT13B-ABA05230.28 BA05
136od3_W_DA2_DT3B-ABA05820.12 BA05
146od3_W_DT3_DA4BBBBB01470.27 BB01
156od3_W_DA4_DC5BBBBB01900.14 BB01
166od3_W_DC5_DA6BBBBB00650.38 BB00
176od3_W_DA6_DC7BBBBB00820.17 BB00
186od3_W_DC7_DG8BBBBB00330.49 BB00
196od3_W_DG8_DT9BBBBB00830.21 BB00
206od3_W_DT9_DG10B12BB04850.22 BB04
216od3_W_DG10_DT11BBBBB00840.15 BB00
226od3_W_DT11_DA12BBBBB01810.18 BB01
236od3_W_DA12_DT13B-ABA01360.22 BA01
246od3_Y_DC1_DA2OPNOP22270.72 OP22
256od3_Y_DA2_DT3BBBBB01700.23 BB01
266od3_Y_DT3_DA4BBBBB01710.26 BB01
276od3_Y_DA4_DC5BBBBB01860.19 BB01
286od3_Y_DC5_DA6BBBBB00650.36 BB00
296od3_Y_DA6_DC7BBBBB00840.18 BB00
306od3_Y_DC7_DG8BBBBB00500.42 BB00
316od3_Y_DG8_DT9BBBBB00790.25 BB00
326od3_Y_DT9_DG10B12BB04840.19 BB04
336od3_Y_DG10_DT11BBBBB00830.18 BB00
346od3_Y_DT11_DA12BBBBB01520.28 BB01
356od3_Y_DA12_DT13B-ABA01220.24 BA01
366od3_Z_DC1_DA2NANNANT00.76 IC05
376od3_Z_DA2_DT3B-ABA05870.13 BA05
386od3_Z_DT3_DA4BBBBB00120.52 BB00
396od3_Z_DA4_DC5BBBBB00840.16 BB00
406od3_Z_DC5_DA6B12BB04720.22 BB04
416od3_Z_DA6_DC7BBBBB00800.17 BB00
426od3_Z_DC7_DG8BBBBB00350.44 BB00
436od3_Z_DG8_DT9BBBBB01700.27 BB01
446od3_Z_DT9_DG10BBBBB00490.36 BB00
456od3_Z_DG10_DT11BBBBB00710.22 BB00
466od3_Z_DT11_DA12BBBBB00700.29 BB00
476od3_Z_DA12_DT13B-ABA01630.20 BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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