Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the human FOXN3 DNA binding domain in complex with a forkhead DNA sequence

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016nce_C_DT1_DC2NANNANT00.39 BB16
026nce_C_DC2_DT3B-ABA05720.31 BA05
036nce_C_DT3_DT4BBBBB01480.29 BB01
046nce_C_DT4_DA5B12BB04130.21 BB04
056nce_C_DA5_DA6BBBBB01510.24 BB01
066nce_C_DA6_DG7BBBBB01500.25 BB01
076nce_C_DG7_DT8B-ABA05370.16 BA05
086nce_C_DT8_DA9A-BAB01340.45 AB01
096nce_C_DA9_DA10BBBBB00630.20 BB00
106nce_C_DA10_DA11BBBBB00700.22 BB00
116nce_C_DA11_DC12B-ABA09180.46 BA09
126nce_C_DC12_DA13A-BAB05130.27 AB05
136nce_C_DA13_DA14BBBBB00900.13 BB00
146nce_C_DA14_DT15B-ABA01480.20 BA01
156nce_C_DT15_DG16AAAAA09710.26 AA09
166nce_D_DA1_DC2BBBBB01210.28 BB01
176nce_D_DC2_DA3A-BAB03770.26 AB03
186nce_D_DA3_DT4BBBBB01720.20 BB01
196nce_D_DT4_DT5BBBBB01600.25 BB01
206nce_D_DT5_DG6B-ABA01130.21 BA01
216nce_D_DG6_DT7BBBBB01400.31 BB01
226nce_D_DT7_DT8B-ABA05350.15 BA05
236nce_D_DT8_DT9A-BAB01110.41 AB01
246nce_D_DT9_DA10BBBBB00630.22 BB00
256nce_D_DA10_DC11BBBBB00500.31 BB00
266nce_D_DC11_DT12B-ABA01370.17 BA01
276nce_D_DT12_DT13A-BAB01490.40 AB01
286nce_D_DT13_DA14BBBBB00860.18 BB00
296nce_D_DA14_DA15BBBBB00550.31 BB00
306nce_D_DA15_DG16BBwBB02270.29 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N