Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human Argonaute2-miR-122 bound to a seed and supplementary paired target
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6n4o_C_U1_G2 | NAN | NANT | 0 | 1.16 |
| 02 | 6n4o_C_G2_G3 | AAA | AA00 | 88 | 0.21 |
| 03 | 6n4o_C_G3_A4 | AAA | AA08 | 85 | 0.32 |
| 04 | 6n4o_C_A4_G5 | AAA | AA08 | 87 | 0.19 |
| 05 | 6n4o_C_G5_U6 | A-B | AB05 | 82 | 0.15 |
| 06 | 6n4o_C_U6_G7 | B-A | BA10 | 22 | 0.44 |
| 07 | 6n4o_C_G7_U8 | AAA | AA08 | 92 | 0.23 |
| 08 | 6n4o_C_U8_G9 | NAN | NANT | 0 | 0.94 |
| 09 | 6n4o_C_C11_A12 | NAN | NANT | 0 | 1.54 |
| 10 | 6n4o_C_A12_A13 | AAA | AA08 | 21 | 0.65 |
| 11 | 6n4o_C_A13_U14 | AAA | AA00 | 76 | 0.19 |
| 12 | 6n4o_C_U14_G15 | AAA | AA00 | 82 | 0.30 |
| 13 | 6n4o_C_G15_G16 | NAN | NANT | 0 | 0.46 |
| 14 | 6n4o_C_G16_U17 | NAN | NANT | 0 | 0.81 |
| 15 | 6n4o_C_U17_G18 | NAN | NANT | 0 | 0.66 |
| 16 | 6n4o_C_U20_U21 | NAN | NANT | 0 | 0.69 |
| 17 | 6n4o_D_C1_C2 | AAA | AA00 | 87 | 0.16 |
| 18 | 6n4o_D_C2_A3 | AAA | AA00 | 90 | 0.15 |
| 19 | 6n4o_D_A3_U4 | AAA | AA08 | 87 | 0.19 |
| 20 | 6n4o_D_U4_U5 | AAA | AA00 | 10 | 0.57 |
| 21 | 6n4o_D_A9_C10 | AAw | AA01 | 43 | 0.34 |
| 22 | 6n4o_D_C10_A11 | AAA | AA08 | 62 | 0.21 |
| 23 | 6n4o_D_A11_C12 | AAw | AA06 | 48 | 0.24 |
| 24 | 6n4o_D_C12_U13 | AAA | AA03 | 86 | 0.21 |
| 25 | 6n4o_D_U13_C14 | AAw | AA06 | 92 | 0.22 |
| 26 | 6n4o_D_C14_C15 | A-B | AB05 | 56 | 0.23 |
| 27 | 6n4o_D_C15_A16 | NAN | NANT | 0 | 1.83 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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