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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 12-mer dsRNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016m6s_C_GTP.A1_G2AAAAA00740.23 AA00
026m6s_C_GTP.B1_G2AAAAA00700.23 AA00
036m6s_C_G2_C3AAAAA00820.20 AA00
046m6s_C_C3_G4AAAAA00710.18 AA00
056m6s_C_G4_C5AAAAA00650.29 AA00
066m6s_C_C5_G6AAwAA01570.40 AA01
076m6s_C_G6_C7AAAAA08930.17 AA08
086m6s_C_C7_G8AAAAA00900.13 AA00
096m6s_C_G8_C9AAAAA00810.14 AA00
106m6s_C_C9_G10AAAAA00930.13 AA00
116m6s_C_G10_C11AAAAA08860.17 AA08
126m6s_C_C11_C12AAAAA00820.23 AA00
136m6s_D_GTP.A1_G2AAAAA00800.21 AA00
146m6s_D_GTP.B1_G2AAAAA00730.21 AA00
156m6s_D_G2_C3AAAAA00740.20 AA00
166m6s_D_C3_G4AAAAA00780.16 AA00
176m6s_D_G4_C5AAwAA01230.23 AA01
186m6s_D_C5_G6NANNANT00.41 AA06
196m6s_D_G6_C7AAAAA00620.23 AA00
206m6s_D_C7_G8AAAAA00710.25 AA00
216m6s_D_G8_C9AAAAA00750.24 AA00
226m6s_D_C9_G10AAAAA00880.14 AA00
236m6s_D_G10_C11AAAAA00920.11 AA00
246m6s_D_C11_C12AAAAA00830.23 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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